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Chemical Multiverse: An Expanded View of Chemical Space

Technological advances and practical applications of the chemical space concept in drug discovery, natural product research, and other research areas have attracted the scientific community‘s attention. The large‐ and ultra‐large chemical spaces are associated with the significant increase in the nu...

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Detalles Bibliográficos
Autores principales: Medina‐Franco, José L., Chávez‐Hernández, Ana L., López‐López, Edgar, Saldívar‐González, Fernanda I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9787733/
https://www.ncbi.nlm.nih.gov/pubmed/35916110
http://dx.doi.org/10.1002/minf.202200116
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author Medina‐Franco, José L.
Chávez‐Hernández, Ana L.
López‐López, Edgar
Saldívar‐González, Fernanda I.
author_facet Medina‐Franco, José L.
Chávez‐Hernández, Ana L.
López‐López, Edgar
Saldívar‐González, Fernanda I.
author_sort Medina‐Franco, José L.
collection PubMed
description Technological advances and practical applications of the chemical space concept in drug discovery, natural product research, and other research areas have attracted the scientific community‘s attention. The large‐ and ultra‐large chemical spaces are associated with the significant increase in the number of compounds that can potentially be made and exist and the increasing number of experimental and calculated descriptors, that are emerging that encode the molecular structure and/or property aspects of the molecules. Due to the importance and continued evolution of compound libraries, herein, we discuss definitions proposed in the literature for chemical space and emphasize the convenience, discussed in the literature to use complementary descriptors to obtain a comprehensive view of the chemical space of compound data sets. In this regard, we introduce the term chemical multiverse to refer to the comprehensive analysis of compound data sets through several chemical spaces, each defined by a different set of chemical representations. The chemical multiverse is contrasted with a related idea: consensus chemical space.
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spelling pubmed-97877332022-12-28 Chemical Multiverse: An Expanded View of Chemical Space Medina‐Franco, José L. Chávez‐Hernández, Ana L. López‐López, Edgar Saldívar‐González, Fernanda I. Mol Inform Reviews Technological advances and practical applications of the chemical space concept in drug discovery, natural product research, and other research areas have attracted the scientific community‘s attention. The large‐ and ultra‐large chemical spaces are associated with the significant increase in the number of compounds that can potentially be made and exist and the increasing number of experimental and calculated descriptors, that are emerging that encode the molecular structure and/or property aspects of the molecules. Due to the importance and continued evolution of compound libraries, herein, we discuss definitions proposed in the literature for chemical space and emphasize the convenience, discussed in the literature to use complementary descriptors to obtain a comprehensive view of the chemical space of compound data sets. In this regard, we introduce the term chemical multiverse to refer to the comprehensive analysis of compound data sets through several chemical spaces, each defined by a different set of chemical representations. The chemical multiverse is contrasted with a related idea: consensus chemical space. John Wiley and Sons Inc. 2022-08-23 2022-11 /pmc/articles/PMC9787733/ /pubmed/35916110 http://dx.doi.org/10.1002/minf.202200116 Text en © 2022 The Authors. Molecular Informatics published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Reviews
Medina‐Franco, José L.
Chávez‐Hernández, Ana L.
López‐López, Edgar
Saldívar‐González, Fernanda I.
Chemical Multiverse: An Expanded View of Chemical Space
title Chemical Multiverse: An Expanded View of Chemical Space
title_full Chemical Multiverse: An Expanded View of Chemical Space
title_fullStr Chemical Multiverse: An Expanded View of Chemical Space
title_full_unstemmed Chemical Multiverse: An Expanded View of Chemical Space
title_short Chemical Multiverse: An Expanded View of Chemical Space
title_sort chemical multiverse: an expanded view of chemical space
topic Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9787733/
https://www.ncbi.nlm.nih.gov/pubmed/35916110
http://dx.doi.org/10.1002/minf.202200116
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