Cargando…

Recent PELE Developments and Applications in Drug Discovery Campaigns

Computer simulation techniques are gaining a central role in molecular pharmacology. Due to several factors, including the significant improvements of traditional molecular modelling, the irruption of machine learning methods, the massive data generation, or the unlimited computational resources thr...

Descripción completa

Detalles Bibliográficos
Autores principales: Puch-Giner, Ignasi, Molina, Alexis, Municoy, Martí, Pérez, Carles, Guallar, Victor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9788188/
https://www.ncbi.nlm.nih.gov/pubmed/36555731
http://dx.doi.org/10.3390/ijms232416090
_version_ 1784858693841453056
author Puch-Giner, Ignasi
Molina, Alexis
Municoy, Martí
Pérez, Carles
Guallar, Victor
author_facet Puch-Giner, Ignasi
Molina, Alexis
Municoy, Martí
Pérez, Carles
Guallar, Victor
author_sort Puch-Giner, Ignasi
collection PubMed
description Computer simulation techniques are gaining a central role in molecular pharmacology. Due to several factors, including the significant improvements of traditional molecular modelling, the irruption of machine learning methods, the massive data generation, or the unlimited computational resources through cloud computing, the future of pharmacology seems to go hand in hand with in silico predictions. In this review, we summarize our recent efforts in such a direction, centered on the unconventional Monte Carlo PELE software and on its coupling with machine learning techniques. We also provide new data on combining two recent new techniques, aquaPELE capable of exhaustive water sampling and fragPELE, for fragment growing.
format Online
Article
Text
id pubmed-9788188
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-97881882022-12-24 Recent PELE Developments and Applications in Drug Discovery Campaigns Puch-Giner, Ignasi Molina, Alexis Municoy, Martí Pérez, Carles Guallar, Victor Int J Mol Sci Review Computer simulation techniques are gaining a central role in molecular pharmacology. Due to several factors, including the significant improvements of traditional molecular modelling, the irruption of machine learning methods, the massive data generation, or the unlimited computational resources through cloud computing, the future of pharmacology seems to go hand in hand with in silico predictions. In this review, we summarize our recent efforts in such a direction, centered on the unconventional Monte Carlo PELE software and on its coupling with machine learning techniques. We also provide new data on combining two recent new techniques, aquaPELE capable of exhaustive water sampling and fragPELE, for fragment growing. MDPI 2022-12-17 /pmc/articles/PMC9788188/ /pubmed/36555731 http://dx.doi.org/10.3390/ijms232416090 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Puch-Giner, Ignasi
Molina, Alexis
Municoy, Martí
Pérez, Carles
Guallar, Victor
Recent PELE Developments and Applications in Drug Discovery Campaigns
title Recent PELE Developments and Applications in Drug Discovery Campaigns
title_full Recent PELE Developments and Applications in Drug Discovery Campaigns
title_fullStr Recent PELE Developments and Applications in Drug Discovery Campaigns
title_full_unstemmed Recent PELE Developments and Applications in Drug Discovery Campaigns
title_short Recent PELE Developments and Applications in Drug Discovery Campaigns
title_sort recent pele developments and applications in drug discovery campaigns
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9788188/
https://www.ncbi.nlm.nih.gov/pubmed/36555731
http://dx.doi.org/10.3390/ijms232416090
work_keys_str_mv AT puchginerignasi recentpeledevelopmentsandapplicationsindrugdiscoverycampaigns
AT molinaalexis recentpeledevelopmentsandapplicationsindrugdiscoverycampaigns
AT municoymarti recentpeledevelopmentsandapplicationsindrugdiscoverycampaigns
AT perezcarles recentpeledevelopmentsandapplicationsindrugdiscoverycampaigns
AT guallarvictor recentpeledevelopmentsandapplicationsindrugdiscoverycampaigns