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Loop-Mediated Isothermal Amplification: From Theory to Practice

Increasing the accuracy of pathogen identification and reducing the duration of analysis remain relevant for modern molecular diagnostics up to this day. In laboratory and clinical practice, detection of pathogens mostly relies on methods of nucleic acid amplification, among which the polymerase cha...

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Detalles Bibliográficos
Autores principales: Shirshikov, F. V., Bespyatykh, J. A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pleiades Publishing 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9788664/
https://www.ncbi.nlm.nih.gov/pubmed/36590469
http://dx.doi.org/10.1134/S106816202206022X
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author Shirshikov, F. V.
Bespyatykh, J. A.
author_facet Shirshikov, F. V.
Bespyatykh, J. A.
author_sort Shirshikov, F. V.
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description Increasing the accuracy of pathogen identification and reducing the duration of analysis remain relevant for modern molecular diagnostics up to this day. In laboratory and clinical practice, detection of pathogens mostly relies on methods of nucleic acid amplification, among which the polymerase chain reaction (PCR) is considered the “gold standard.” Nevertheless, in some cases, isothermal amplification methods act as an alternative to PCR diagnostics. Upon more than thirty years of the development of isothermal DNA synthesis, the appearance of loop-mediated isothermal amplification (LAMP) has enabled new directions of in-field diagnostics of bacterial and viral infections. This review examines the key characteristics of the LAMP method and corresponding features in practice. We discuss the structure of LAMP amplicons with single-stranded loops, which have the sites for primer annealing under isothermal conditions. The latest achievements in the modification of the LAMP method are analyzed, which allow considering it as a unique platform for creating the next-generation diagnostic assays.
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spelling pubmed-97886642022-12-27 Loop-Mediated Isothermal Amplification: From Theory to Practice Shirshikov, F. V. Bespyatykh, J. A. Russ J Bioorg Chem Review Article Increasing the accuracy of pathogen identification and reducing the duration of analysis remain relevant for modern molecular diagnostics up to this day. In laboratory and clinical practice, detection of pathogens mostly relies on methods of nucleic acid amplification, among which the polymerase chain reaction (PCR) is considered the “gold standard.” Nevertheless, in some cases, isothermal amplification methods act as an alternative to PCR diagnostics. Upon more than thirty years of the development of isothermal DNA synthesis, the appearance of loop-mediated isothermal amplification (LAMP) has enabled new directions of in-field diagnostics of bacterial and viral infections. This review examines the key characteristics of the LAMP method and corresponding features in practice. We discuss the structure of LAMP amplicons with single-stranded loops, which have the sites for primer annealing under isothermal conditions. The latest achievements in the modification of the LAMP method are analyzed, which allow considering it as a unique platform for creating the next-generation diagnostic assays. Pleiades Publishing 2022-12-23 2022 /pmc/articles/PMC9788664/ /pubmed/36590469 http://dx.doi.org/10.1134/S106816202206022X Text en © Pleiades Publishing, Ltd. 2022, ISSN 1068-1620, Russian Journal of Bioorganic Chemistry, 2022, Vol. 48, No. 6, pp. 1159–1174. © Pleiades Publishing, Ltd., 2022.Russian Text © The Author(s), 2022, published in Bioorganicheskaya Khimiya, 2022, Vol. 48, No. 6, pp. 677–693. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Review Article
Shirshikov, F. V.
Bespyatykh, J. A.
Loop-Mediated Isothermal Amplification: From Theory to Practice
title Loop-Mediated Isothermal Amplification: From Theory to Practice
title_full Loop-Mediated Isothermal Amplification: From Theory to Practice
title_fullStr Loop-Mediated Isothermal Amplification: From Theory to Practice
title_full_unstemmed Loop-Mediated Isothermal Amplification: From Theory to Practice
title_short Loop-Mediated Isothermal Amplification: From Theory to Practice
title_sort loop-mediated isothermal amplification: from theory to practice
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9788664/
https://www.ncbi.nlm.nih.gov/pubmed/36590469
http://dx.doi.org/10.1134/S106816202206022X
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