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The Leipzig Health Atlas—An Open Platform to Present, Archive, and Share Biomedical Data, Analyses, and Models Online

Background  Clinical trials, epidemiological studies, clinical registries, and other prospective research projects, together with patient care services, are main sources of data in the medical research domain. They serve often as a basis for secondary research in evidence-based medicine, prediction...

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Autores principales: Kirsten, Toralf, Meineke, Frank A., Loeffler-Wirth, Henry, Beger, Christoph, Uciteli, Alexandr, Stäubert, Sebastian, Löbe, Matthias, Hänsel, René, Rauscher, Franziska G., Schuster, Judith, Peschel, Thomas, Herre, Heinrich, Wagner, Jonas, Zachariae, Silke, Engel, Christoph, Scholz, Markus, Rahm, Erhard, Binder, Hans, Loeffler, Markus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Georg Thieme Verlag KG 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9788914/
https://www.ncbi.nlm.nih.gov/pubmed/35915977
http://dx.doi.org/10.1055/a-1914-1985
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author Kirsten, Toralf
Meineke, Frank A.
Loeffler-Wirth, Henry
Beger, Christoph
Uciteli, Alexandr
Stäubert, Sebastian
Löbe, Matthias
Hänsel, René
Rauscher, Franziska G.
Schuster, Judith
Peschel, Thomas
Herre, Heinrich
Wagner, Jonas
Zachariae, Silke
Engel, Christoph
Scholz, Markus
Rahm, Erhard
Binder, Hans
Loeffler, Markus
author_facet Kirsten, Toralf
Meineke, Frank A.
Loeffler-Wirth, Henry
Beger, Christoph
Uciteli, Alexandr
Stäubert, Sebastian
Löbe, Matthias
Hänsel, René
Rauscher, Franziska G.
Schuster, Judith
Peschel, Thomas
Herre, Heinrich
Wagner, Jonas
Zachariae, Silke
Engel, Christoph
Scholz, Markus
Rahm, Erhard
Binder, Hans
Loeffler, Markus
author_sort Kirsten, Toralf
collection PubMed
description Background  Clinical trials, epidemiological studies, clinical registries, and other prospective research projects, together with patient care services, are main sources of data in the medical research domain. They serve often as a basis for secondary research in evidence-based medicine, prediction models for disease, and its progression. This data are often neither sufficiently described nor accessible. Related models are often not accessible as a functional program tool for interested users from the health care and biomedical domains. Objective  The interdisciplinary project Leipzig Health Atlas (LHA) was developed to close this gap. LHA is an online platform that serves as a sustainable archive providing medical data, metadata, models, and novel phenotypes from clinical trials, epidemiological studies, and other medical research projects. Methods  Data, models, and phenotypes are described by semantically rich metadata. The platform prefers to share data and models presented in original publications but is also open for nonpublished data. LHA provides and associates unique permanent identifiers for each dataset and model. Hence, the platform can be used to share prepared, quality-assured datasets and models while they are referenced in publications. All managed data, models, and phenotypes in LHA follow the FAIR principles, with public availability or restricted access for specific user groups. Results  The LHA platform is in productive mode ( https://www.health-atlas.de/ ). It is already used by a variety of clinical trial and research groups and is becoming increasingly popular also in the biomedical community. LHA is an integral part of the forthcoming initiative building a national research data infrastructure for health in Germany.
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spelling pubmed-97889142022-12-24 The Leipzig Health Atlas—An Open Platform to Present, Archive, and Share Biomedical Data, Analyses, and Models Online Kirsten, Toralf Meineke, Frank A. Loeffler-Wirth, Henry Beger, Christoph Uciteli, Alexandr Stäubert, Sebastian Löbe, Matthias Hänsel, René Rauscher, Franziska G. Schuster, Judith Peschel, Thomas Herre, Heinrich Wagner, Jonas Zachariae, Silke Engel, Christoph Scholz, Markus Rahm, Erhard Binder, Hans Loeffler, Markus Methods Inf Med Background  Clinical trials, epidemiological studies, clinical registries, and other prospective research projects, together with patient care services, are main sources of data in the medical research domain. They serve often as a basis for secondary research in evidence-based medicine, prediction models for disease, and its progression. This data are often neither sufficiently described nor accessible. Related models are often not accessible as a functional program tool for interested users from the health care and biomedical domains. Objective  The interdisciplinary project Leipzig Health Atlas (LHA) was developed to close this gap. LHA is an online platform that serves as a sustainable archive providing medical data, metadata, models, and novel phenotypes from clinical trials, epidemiological studies, and other medical research projects. Methods  Data, models, and phenotypes are described by semantically rich metadata. The platform prefers to share data and models presented in original publications but is also open for nonpublished data. LHA provides and associates unique permanent identifiers for each dataset and model. Hence, the platform can be used to share prepared, quality-assured datasets and models while they are referenced in publications. All managed data, models, and phenotypes in LHA follow the FAIR principles, with public availability or restricted access for specific user groups. Results  The LHA platform is in productive mode ( https://www.health-atlas.de/ ). It is already used by a variety of clinical trial and research groups and is becoming increasingly popular also in the biomedical community. LHA is an integral part of the forthcoming initiative building a national research data infrastructure for health in Germany. Georg Thieme Verlag KG 2022-12-23 /pmc/articles/PMC9788914/ /pubmed/35915977 http://dx.doi.org/10.1055/a-1914-1985 Text en The Author(s). This is an open access article published by Thieme under the terms of the Creative Commons Attribution-NonDerivative-NonCommercial License, permitting copying and reproduction so long as the original work is given appropriate credit. Contents may not be used for commercial purposes, or adapted, remixed, transformed or built upon. ( https://creativecommons.org/licenses/by-nc-nd/4.0/ ) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License, which permits unrestricted reproduction and distribution, for non-commercial purposes only; and use and reproduction, but not distribution, of adapted material for non-commercial purposes only, provided the original work is properly cited.
spellingShingle Kirsten, Toralf
Meineke, Frank A.
Loeffler-Wirth, Henry
Beger, Christoph
Uciteli, Alexandr
Stäubert, Sebastian
Löbe, Matthias
Hänsel, René
Rauscher, Franziska G.
Schuster, Judith
Peschel, Thomas
Herre, Heinrich
Wagner, Jonas
Zachariae, Silke
Engel, Christoph
Scholz, Markus
Rahm, Erhard
Binder, Hans
Loeffler, Markus
The Leipzig Health Atlas—An Open Platform to Present, Archive, and Share Biomedical Data, Analyses, and Models Online
title The Leipzig Health Atlas—An Open Platform to Present, Archive, and Share Biomedical Data, Analyses, and Models Online
title_full The Leipzig Health Atlas—An Open Platform to Present, Archive, and Share Biomedical Data, Analyses, and Models Online
title_fullStr The Leipzig Health Atlas—An Open Platform to Present, Archive, and Share Biomedical Data, Analyses, and Models Online
title_full_unstemmed The Leipzig Health Atlas—An Open Platform to Present, Archive, and Share Biomedical Data, Analyses, and Models Online
title_short The Leipzig Health Atlas—An Open Platform to Present, Archive, and Share Biomedical Data, Analyses, and Models Online
title_sort leipzig health atlas—an open platform to present, archive, and share biomedical data, analyses, and models online
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9788914/
https://www.ncbi.nlm.nih.gov/pubmed/35915977
http://dx.doi.org/10.1055/a-1914-1985
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