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In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models
In silico profiling is used in identification of active compounds and guide rational use of traditional medicines. Previous studies on Ethiopian indigenous aloes focused on documentation of phytochemical compositions and traditional uses. In this study, ADMET and drug-likeness properties of phytoche...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9789083/ https://www.ncbi.nlm.nih.gov/pubmed/36564437 http://dx.doi.org/10.1038/s41598-022-26446-x |
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author | Bultum, Lemessa Etana Tolossa, Gemechu Bekele Kim, Gwangmin Kwon, Ohhyeon Lee, Doheon |
author_facet | Bultum, Lemessa Etana Tolossa, Gemechu Bekele Kim, Gwangmin Kwon, Ohhyeon Lee, Doheon |
author_sort | Bultum, Lemessa Etana |
collection | PubMed |
description | In silico profiling is used in identification of active compounds and guide rational use of traditional medicines. Previous studies on Ethiopian indigenous aloes focused on documentation of phytochemical compositions and traditional uses. In this study, ADMET and drug-likeness properties of phytochemicals from Ethiopian indigenous aloes were evaluated, and pharmacophore-based profiling was done using Discovery Studio to predict therapeutic targets. The targets were examined using KEGG pathway, gene ontology and network analysis. Using random-walk with restart algorithm, network propagation was performed in CODA network to find diseases associated with the targets. As a result, 82 human targets were predicted and found to be involved in several molecular functions and biological processes. The targets also were linked to various cancers and diseases of immune system, metabolism, neurological system, musculoskeletal system, digestive system, hematologic, infectious, mouth and dental, and congenital disorder of metabolism. 207 KEGG pathways were enriched with the targets, and the main pathways were metabolism of steroid hormone biosynthesis, lipid and atherosclerosis, chemical carcinogenesis, and pathways in cancer. In conclusion, in silico target fishing and network analysis revealed therapeutic activities of the phytochemicals, demonstrating that Ethiopian indigenous aloes exhibit polypharmacology effects on numerous genes and signaling pathways linked to many diseases. |
format | Online Article Text |
id | pubmed-9789083 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-97890832022-12-25 In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models Bultum, Lemessa Etana Tolossa, Gemechu Bekele Kim, Gwangmin Kwon, Ohhyeon Lee, Doheon Sci Rep Article In silico profiling is used in identification of active compounds and guide rational use of traditional medicines. Previous studies on Ethiopian indigenous aloes focused on documentation of phytochemical compositions and traditional uses. In this study, ADMET and drug-likeness properties of phytochemicals from Ethiopian indigenous aloes were evaluated, and pharmacophore-based profiling was done using Discovery Studio to predict therapeutic targets. The targets were examined using KEGG pathway, gene ontology and network analysis. Using random-walk with restart algorithm, network propagation was performed in CODA network to find diseases associated with the targets. As a result, 82 human targets were predicted and found to be involved in several molecular functions and biological processes. The targets also were linked to various cancers and diseases of immune system, metabolism, neurological system, musculoskeletal system, digestive system, hematologic, infectious, mouth and dental, and congenital disorder of metabolism. 207 KEGG pathways were enriched with the targets, and the main pathways were metabolism of steroid hormone biosynthesis, lipid and atherosclerosis, chemical carcinogenesis, and pathways in cancer. In conclusion, in silico target fishing and network analysis revealed therapeutic activities of the phytochemicals, demonstrating that Ethiopian indigenous aloes exhibit polypharmacology effects on numerous genes and signaling pathways linked to many diseases. Nature Publishing Group UK 2022-12-23 /pmc/articles/PMC9789083/ /pubmed/36564437 http://dx.doi.org/10.1038/s41598-022-26446-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Bultum, Lemessa Etana Tolossa, Gemechu Bekele Kim, Gwangmin Kwon, Ohhyeon Lee, Doheon In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models |
title | In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models |
title_full | In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models |
title_fullStr | In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models |
title_full_unstemmed | In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models |
title_short | In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models |
title_sort | in silico activity and admet profiling of phytochemicals from ethiopian indigenous aloes using pharmacophore models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9789083/ https://www.ncbi.nlm.nih.gov/pubmed/36564437 http://dx.doi.org/10.1038/s41598-022-26446-x |
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