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Accelerating Cardiac Diffusion Tensor Imaging With a U‐Net Based Model: Toward Single Breath‐Hold
BACKGROUND: In vivo cardiac diffusion tensor imaging (cDTI) characterizes myocardial microstructure. Despite its potential clinical impact, considerable technical challenges exist due to the inherent low signal‐to‐noise ratio. PURPOSE: To reduce scan time toward one breath‐hold by reconstructing dif...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9790699/ https://www.ncbi.nlm.nih.gov/pubmed/35460138 http://dx.doi.org/10.1002/jmri.28199 |
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author | Ferreira, Pedro F. Banerjee, Arjun Scott, Andrew D. Khalique, Zohya Yang, Guang Rajakulasingam, Ramyah Dwornik, Maria De Silva, Ranil Pennell, Dudley J. Firmin, David N. Nielles‐Vallespin, Sonia |
author_facet | Ferreira, Pedro F. Banerjee, Arjun Scott, Andrew D. Khalique, Zohya Yang, Guang Rajakulasingam, Ramyah Dwornik, Maria De Silva, Ranil Pennell, Dudley J. Firmin, David N. Nielles‐Vallespin, Sonia |
author_sort | Ferreira, Pedro F. |
collection | PubMed |
description | BACKGROUND: In vivo cardiac diffusion tensor imaging (cDTI) characterizes myocardial microstructure. Despite its potential clinical impact, considerable technical challenges exist due to the inherent low signal‐to‐noise ratio. PURPOSE: To reduce scan time toward one breath‐hold by reconstructing diffusion tensors for in vivo cDTI with a fitting‐free deep learning approach. STUDY TYPE: Retrospective. POPULATION: A total of 197 healthy controls, 547 cardiac patients. FIELD STRENGTH/SEQUENCE: A 3 T, diffusion‐weighted stimulated echo acquisition mode single‐shot echo‐planar imaging sequence. ASSESSMENT: A U‐Net was trained to reconstruct the diffusion tensor elements of the reference results from reduced datasets that could be acquired in 5, 3 or 1 breath‐hold(s) (BH) per slice. Fractional anisotropy (FA), mean diffusivity (MD), helix angle (HA), and sheetlet angle (E2A) were calculated and compared to the same measures when using a conventional linear‐least‐square (LLS) tensor fit with the same reduced datasets. A conventional LLS tensor fit with all available data (12 ± 2.0 [mean ± sd] breath‐holds) was used as the reference baseline. STATISTICAL TESTS: Wilcoxon signed rank/rank sum and Kruskal–Wallis tests. Statistical significance threshold was set at P = 0.05. Intersubject measures are quoted as median [interquartile range]. RESULTS: For global mean or median results, both the LLS and U‐Net methods with reduced datasets present a bias for some of the results. For both LLS and U‐Net, there is a small but significant difference from the reference results except for LLS: MD 5BH (P = 0.38) and MD 3BH (P = 0.09). When considering direct pixel‐wise errors the U‐Net model outperformed significantly the LLS tensor fit for reduced datasets that can be acquired in three or just one breath‐hold for all parameters. DATA CONCLUSION: Diffusion tensor prediction with a trained U‐Net is a promising approach to minimize the number of breath‐holds needed in clinical cDTI studies. EVIDENCE LEVEL: 4 TECHNICAL EFFICACY: Stage 1 |
format | Online Article Text |
id | pubmed-9790699 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97906992022-12-28 Accelerating Cardiac Diffusion Tensor Imaging With a U‐Net Based Model: Toward Single Breath‐Hold Ferreira, Pedro F. Banerjee, Arjun Scott, Andrew D. Khalique, Zohya Yang, Guang Rajakulasingam, Ramyah Dwornik, Maria De Silva, Ranil Pennell, Dudley J. Firmin, David N. Nielles‐Vallespin, Sonia J Magn Reson Imaging Research Articles BACKGROUND: In vivo cardiac diffusion tensor imaging (cDTI) characterizes myocardial microstructure. Despite its potential clinical impact, considerable technical challenges exist due to the inherent low signal‐to‐noise ratio. PURPOSE: To reduce scan time toward one breath‐hold by reconstructing diffusion tensors for in vivo cDTI with a fitting‐free deep learning approach. STUDY TYPE: Retrospective. POPULATION: A total of 197 healthy controls, 547 cardiac patients. FIELD STRENGTH/SEQUENCE: A 3 T, diffusion‐weighted stimulated echo acquisition mode single‐shot echo‐planar imaging sequence. ASSESSMENT: A U‐Net was trained to reconstruct the diffusion tensor elements of the reference results from reduced datasets that could be acquired in 5, 3 or 1 breath‐hold(s) (BH) per slice. Fractional anisotropy (FA), mean diffusivity (MD), helix angle (HA), and sheetlet angle (E2A) were calculated and compared to the same measures when using a conventional linear‐least‐square (LLS) tensor fit with the same reduced datasets. A conventional LLS tensor fit with all available data (12 ± 2.0 [mean ± sd] breath‐holds) was used as the reference baseline. STATISTICAL TESTS: Wilcoxon signed rank/rank sum and Kruskal–Wallis tests. Statistical significance threshold was set at P = 0.05. Intersubject measures are quoted as median [interquartile range]. RESULTS: For global mean or median results, both the LLS and U‐Net methods with reduced datasets present a bias for some of the results. For both LLS and U‐Net, there is a small but significant difference from the reference results except for LLS: MD 5BH (P = 0.38) and MD 3BH (P = 0.09). When considering direct pixel‐wise errors the U‐Net model outperformed significantly the LLS tensor fit for reduced datasets that can be acquired in three or just one breath‐hold for all parameters. DATA CONCLUSION: Diffusion tensor prediction with a trained U‐Net is a promising approach to minimize the number of breath‐holds needed in clinical cDTI studies. EVIDENCE LEVEL: 4 TECHNICAL EFFICACY: Stage 1 John Wiley & Sons, Inc. 2022-04-22 2022-12 /pmc/articles/PMC9790699/ /pubmed/35460138 http://dx.doi.org/10.1002/jmri.28199 Text en © 2022 The Authors. Journal of Magnetic Resonance Imaging published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Ferreira, Pedro F. Banerjee, Arjun Scott, Andrew D. Khalique, Zohya Yang, Guang Rajakulasingam, Ramyah Dwornik, Maria De Silva, Ranil Pennell, Dudley J. Firmin, David N. Nielles‐Vallespin, Sonia Accelerating Cardiac Diffusion Tensor Imaging With a U‐Net Based Model: Toward Single Breath‐Hold |
title | Accelerating Cardiac Diffusion Tensor Imaging With a U‐Net Based Model: Toward Single Breath‐Hold |
title_full | Accelerating Cardiac Diffusion Tensor Imaging With a U‐Net Based Model: Toward Single Breath‐Hold |
title_fullStr | Accelerating Cardiac Diffusion Tensor Imaging With a U‐Net Based Model: Toward Single Breath‐Hold |
title_full_unstemmed | Accelerating Cardiac Diffusion Tensor Imaging With a U‐Net Based Model: Toward Single Breath‐Hold |
title_short | Accelerating Cardiac Diffusion Tensor Imaging With a U‐Net Based Model: Toward Single Breath‐Hold |
title_sort | accelerating cardiac diffusion tensor imaging with a u‐net based model: toward single breath‐hold |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9790699/ https://www.ncbi.nlm.nih.gov/pubmed/35460138 http://dx.doi.org/10.1002/jmri.28199 |
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