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A novel prognostic signature of cuproptosis-related genes and the prognostic value of FDX1 in gliomas
Background: Gliomas are the most common malignant tumors of the central nervous system, with extremely bad prognoses. Cuproptosis is a novel form of regulated cell death. The impact of cuproptosis-related genes on glioma development has not been reported. Methods: The TCGA, GTEx, and CGGA databases...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9792093/ https://www.ncbi.nlm.nih.gov/pubmed/36579333 http://dx.doi.org/10.3389/fgene.2022.992995 |
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author | Zhu, HuaXin Wan, Qinsi Tan, Jiacong Ouyang, Hengyang Pan, Xinyi Li, MeiHua Zhao, YeYu |
author_facet | Zhu, HuaXin Wan, Qinsi Tan, Jiacong Ouyang, Hengyang Pan, Xinyi Li, MeiHua Zhao, YeYu |
author_sort | Zhu, HuaXin |
collection | PubMed |
description | Background: Gliomas are the most common malignant tumors of the central nervous system, with extremely bad prognoses. Cuproptosis is a novel form of regulated cell death. The impact of cuproptosis-related genes on glioma development has not been reported. Methods: The TCGA, GTEx, and CGGA databases were used to retrieve transcriptomic expression data. We employed Cox’s regressions to determine the associations between clinical factors and cuproptosis-related gene expression. Overall survival (OS), disease-specific survival (DSS), and progression-free interval (PFI) were evaluated using the Kaplan-Meier method. We also used the least absolute shrinkage and selection operator (LASSO) regression technique. Results: The expression levels of all 10 CRGs varied considerably between glioma tumors and healthy tissues. In glioma patients, the levels of CDKN2A, FDX1, DLD, DLAT, LIAS, LIPT1, and PDHA1 were significantly associated with the OS, disease-specific survival, and progression-free interval. We used LASSO Cox’s regression to create a prognostic model; the risk score was (0.882340) *FDX1 expression + (0.141089) *DLD expression + (–0.333875) *LIAS expression + (0.356469) *LIPT1 expression + (–0.123851) *PDHA1 expression. A high-risk score/signature was associated with poor OS (hazard ratio = 3.50, 95% confidence interval 2, –4.55, log-rank p < 0.001). Cox’s regression revealed that the FDX1 level independently predicted prognosis; FDX1 may control immune cell infiltration of the tumor microenvironment. Conclusion: The CRG signature may be prognostic in glioma patients, and the FDX1 level may independently predict glioma prognosis. These data may afford new insights into treatment. |
format | Online Article Text |
id | pubmed-9792093 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97920932022-12-27 A novel prognostic signature of cuproptosis-related genes and the prognostic value of FDX1 in gliomas Zhu, HuaXin Wan, Qinsi Tan, Jiacong Ouyang, Hengyang Pan, Xinyi Li, MeiHua Zhao, YeYu Front Genet Genetics Background: Gliomas are the most common malignant tumors of the central nervous system, with extremely bad prognoses. Cuproptosis is a novel form of regulated cell death. The impact of cuproptosis-related genes on glioma development has not been reported. Methods: The TCGA, GTEx, and CGGA databases were used to retrieve transcriptomic expression data. We employed Cox’s regressions to determine the associations between clinical factors and cuproptosis-related gene expression. Overall survival (OS), disease-specific survival (DSS), and progression-free interval (PFI) were evaluated using the Kaplan-Meier method. We also used the least absolute shrinkage and selection operator (LASSO) regression technique. Results: The expression levels of all 10 CRGs varied considerably between glioma tumors and healthy tissues. In glioma patients, the levels of CDKN2A, FDX1, DLD, DLAT, LIAS, LIPT1, and PDHA1 were significantly associated with the OS, disease-specific survival, and progression-free interval. We used LASSO Cox’s regression to create a prognostic model; the risk score was (0.882340) *FDX1 expression + (0.141089) *DLD expression + (–0.333875) *LIAS expression + (0.356469) *LIPT1 expression + (–0.123851) *PDHA1 expression. A high-risk score/signature was associated with poor OS (hazard ratio = 3.50, 95% confidence interval 2, –4.55, log-rank p < 0.001). Cox’s regression revealed that the FDX1 level independently predicted prognosis; FDX1 may control immune cell infiltration of the tumor microenvironment. Conclusion: The CRG signature may be prognostic in glioma patients, and the FDX1 level may independently predict glioma prognosis. These data may afford new insights into treatment. Frontiers Media S.A. 2022-12-12 /pmc/articles/PMC9792093/ /pubmed/36579333 http://dx.doi.org/10.3389/fgene.2022.992995 Text en Copyright © 2022 Zhu, Wan, Tan, Ouyang, Pan, Li and Zhao. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Zhu, HuaXin Wan, Qinsi Tan, Jiacong Ouyang, Hengyang Pan, Xinyi Li, MeiHua Zhao, YeYu A novel prognostic signature of cuproptosis-related genes and the prognostic value of FDX1 in gliomas |
title | A novel prognostic signature of cuproptosis-related genes and the prognostic value of FDX1 in gliomas |
title_full | A novel prognostic signature of cuproptosis-related genes and the prognostic value of FDX1 in gliomas |
title_fullStr | A novel prognostic signature of cuproptosis-related genes and the prognostic value of FDX1 in gliomas |
title_full_unstemmed | A novel prognostic signature of cuproptosis-related genes and the prognostic value of FDX1 in gliomas |
title_short | A novel prognostic signature of cuproptosis-related genes and the prognostic value of FDX1 in gliomas |
title_sort | novel prognostic signature of cuproptosis-related genes and the prognostic value of fdx1 in gliomas |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9792093/ https://www.ncbi.nlm.nih.gov/pubmed/36579333 http://dx.doi.org/10.3389/fgene.2022.992995 |
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