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Multi-objective learning and explanation for stroke risk assessment in Shanxi province
Stroke is the leading cause of death in China (Zhou et al. in The Lancet, 2019). A dataset from Shanxi Province is analyzed to predict the risk of patients at four states (low/medium/high/attack) and to estimate transition probabilities between various states via a SHAP DeepExplainer. To handle the...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9792526/ https://www.ncbi.nlm.nih.gov/pubmed/36572718 http://dx.doi.org/10.1038/s41598-022-26595-z |
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author | Ma, Jing Sun, Yiyang Liu, Junjie Huang, Huaxiong Zhou, Xiaoshuang Xu, Shixin |
author_facet | Ma, Jing Sun, Yiyang Liu, Junjie Huang, Huaxiong Zhou, Xiaoshuang Xu, Shixin |
author_sort | Ma, Jing |
collection | PubMed |
description | Stroke is the leading cause of death in China (Zhou et al. in The Lancet, 2019). A dataset from Shanxi Province is analyzed to predict the risk of patients at four states (low/medium/high/attack) and to estimate transition probabilities between various states via a SHAP DeepExplainer. To handle the issues related to an imbalanced sample set, the quadratic interactive deep model (QIDeep) was first proposed by flexible selection and appending of quadratic interactive features. The experimental results showed that the QIDeep model with 3 interactive features achieved the state-of-the-art accuracy 83.33%(95% CI (83.14%; 83.52%)). Blood pressure, physical inactivity, smoking, weight, and total cholesterol are the top five most important features. For the sake of high recall in the attack state, stroke occurrence prediction is considered an auxiliary objective in multi-objective learning. The prediction accuracy was improved, while the recall of the attack state was increased by 17.79% (to 82.06%) compared to QIDeep (from 71.49%) with the same features. The prediction model and analysis tool in this paper provided not only a prediction method but also an attribution explanation of the risk states and transition direction of each patient, a valuable tool for doctors to analyze and diagnose the disease. |
format | Online Article Text |
id | pubmed-9792526 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-97925262022-12-28 Multi-objective learning and explanation for stroke risk assessment in Shanxi province Ma, Jing Sun, Yiyang Liu, Junjie Huang, Huaxiong Zhou, Xiaoshuang Xu, Shixin Sci Rep Article Stroke is the leading cause of death in China (Zhou et al. in The Lancet, 2019). A dataset from Shanxi Province is analyzed to predict the risk of patients at four states (low/medium/high/attack) and to estimate transition probabilities between various states via a SHAP DeepExplainer. To handle the issues related to an imbalanced sample set, the quadratic interactive deep model (QIDeep) was first proposed by flexible selection and appending of quadratic interactive features. The experimental results showed that the QIDeep model with 3 interactive features achieved the state-of-the-art accuracy 83.33%(95% CI (83.14%; 83.52%)). Blood pressure, physical inactivity, smoking, weight, and total cholesterol are the top five most important features. For the sake of high recall in the attack state, stroke occurrence prediction is considered an auxiliary objective in multi-objective learning. The prediction accuracy was improved, while the recall of the attack state was increased by 17.79% (to 82.06%) compared to QIDeep (from 71.49%) with the same features. The prediction model and analysis tool in this paper provided not only a prediction method but also an attribution explanation of the risk states and transition direction of each patient, a valuable tool for doctors to analyze and diagnose the disease. Nature Publishing Group UK 2022-12-26 /pmc/articles/PMC9792526/ /pubmed/36572718 http://dx.doi.org/10.1038/s41598-022-26595-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Ma, Jing Sun, Yiyang Liu, Junjie Huang, Huaxiong Zhou, Xiaoshuang Xu, Shixin Multi-objective learning and explanation for stroke risk assessment in Shanxi province |
title | Multi-objective learning and explanation for stroke risk assessment in Shanxi province |
title_full | Multi-objective learning and explanation for stroke risk assessment in Shanxi province |
title_fullStr | Multi-objective learning and explanation for stroke risk assessment in Shanxi province |
title_full_unstemmed | Multi-objective learning and explanation for stroke risk assessment in Shanxi province |
title_short | Multi-objective learning and explanation for stroke risk assessment in Shanxi province |
title_sort | multi-objective learning and explanation for stroke risk assessment in shanxi province |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9792526/ https://www.ncbi.nlm.nih.gov/pubmed/36572718 http://dx.doi.org/10.1038/s41598-022-26595-z |
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