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DisCanVis: Visualizing integrated structural and functional annotations to better understand the effect of cancer mutations located within disordered proteins

Intrinsically disordered proteins (IDPs) play important roles in a wide range of biological processes and have been associated with various diseases, including cancer. In the last few years, cancer genome projects have systematically collected genetic variations underlying multiple cancer types. In...

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Autores principales: Deutsch, Norbert, Pajkos, Mátyás, Erdős, Gábor, Dosztányi, Zsuzsanna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9793970/
https://www.ncbi.nlm.nih.gov/pubmed/36452990
http://dx.doi.org/10.1002/pro.4522
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author Deutsch, Norbert
Pajkos, Mátyás
Erdős, Gábor
Dosztányi, Zsuzsanna
author_facet Deutsch, Norbert
Pajkos, Mátyás
Erdős, Gábor
Dosztányi, Zsuzsanna
author_sort Deutsch, Norbert
collection PubMed
description Intrinsically disordered proteins (IDPs) play important roles in a wide range of biological processes and have been associated with various diseases, including cancer. In the last few years, cancer genome projects have systematically collected genetic variations underlying multiple cancer types. In parallel, the number and different types of disordered proteins characterized by experimental methods have also significantly increased. Nevertheless, the role of IDPs in various types of cancer is still not well understood. In this work, we present DisCanVis, a novel visualization tool for cancer mutations with a special focus on IDPs. In order to aid the interpretation of observed mutations, genome level information is combined with information about the structural and functional properties of proteins. The web server enables users to inspect individual proteins, collect examples with existing annotations of protein disorder and associated function or to discover currently uncharacterized examples with likely disease relevance. Through a REST API interface and precompiled tables the analysis can be extended to a group of proteins.
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spelling pubmed-97939702023-01-01 DisCanVis: Visualizing integrated structural and functional annotations to better understand the effect of cancer mutations located within disordered proteins Deutsch, Norbert Pajkos, Mátyás Erdős, Gábor Dosztányi, Zsuzsanna Protein Sci Tools for Protein Science Intrinsically disordered proteins (IDPs) play important roles in a wide range of biological processes and have been associated with various diseases, including cancer. In the last few years, cancer genome projects have systematically collected genetic variations underlying multiple cancer types. In parallel, the number and different types of disordered proteins characterized by experimental methods have also significantly increased. Nevertheless, the role of IDPs in various types of cancer is still not well understood. In this work, we present DisCanVis, a novel visualization tool for cancer mutations with a special focus on IDPs. In order to aid the interpretation of observed mutations, genome level information is combined with information about the structural and functional properties of proteins. The web server enables users to inspect individual proteins, collect examples with existing annotations of protein disorder and associated function or to discover currently uncharacterized examples with likely disease relevance. Through a REST API interface and precompiled tables the analysis can be extended to a group of proteins. John Wiley & Sons, Inc. 2023-01-01 /pmc/articles/PMC9793970/ /pubmed/36452990 http://dx.doi.org/10.1002/pro.4522 Text en © 2022 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Tools for Protein Science
Deutsch, Norbert
Pajkos, Mátyás
Erdős, Gábor
Dosztányi, Zsuzsanna
DisCanVis: Visualizing integrated structural and functional annotations to better understand the effect of cancer mutations located within disordered proteins
title DisCanVis: Visualizing integrated structural and functional annotations to better understand the effect of cancer mutations located within disordered proteins
title_full DisCanVis: Visualizing integrated structural and functional annotations to better understand the effect of cancer mutations located within disordered proteins
title_fullStr DisCanVis: Visualizing integrated structural and functional annotations to better understand the effect of cancer mutations located within disordered proteins
title_full_unstemmed DisCanVis: Visualizing integrated structural and functional annotations to better understand the effect of cancer mutations located within disordered proteins
title_short DisCanVis: Visualizing integrated structural and functional annotations to better understand the effect of cancer mutations located within disordered proteins
title_sort discanvis: visualizing integrated structural and functional annotations to better understand the effect of cancer mutations located within disordered proteins
topic Tools for Protein Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9793970/
https://www.ncbi.nlm.nih.gov/pubmed/36452990
http://dx.doi.org/10.1002/pro.4522
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