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Breast cancer combined prognostic model based on lactate metabolism genes
To investigate the impact of lactate metabolism genes, lactate metabolism-related genes (LMRG), and immune infiltrating cells on the prognosis of breast cancer. LMRG was identified via single-cell sequencing. Immune cell infiltration was obtained by the CIBERSORT method. The prognostic genes were ch...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9794285/ https://www.ncbi.nlm.nih.gov/pubmed/36595824 http://dx.doi.org/10.1097/MD.0000000000032485 |
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author | Lu, Na Guan, Xiao Bao, Wei Fan, Zongyao Zhang, Jianping |
author_facet | Lu, Na Guan, Xiao Bao, Wei Fan, Zongyao Zhang, Jianping |
author_sort | Lu, Na |
collection | PubMed |
description | To investigate the impact of lactate metabolism genes, lactate metabolism-related genes (LMRG), and immune infiltrating cells on the prognosis of breast cancer. LMRG was identified via single-cell sequencing. Immune cell infiltration was obtained by the CIBERSORT method. The prognostic genes were chosen by cox regression and the least absolute selection operator approach. lactate metabolism-associated immune-infiltrating cells was determined by difference analysis. The GSE20685 dataset was used as an external validation cohort. The model’s prognostic usefulness was evaluated utilizing survival, immunological microenvironment, and drug sensitivity assessments. NDUFAF6 was most associated with breast cancer prognosis. We obtained a total of 450 LMRG. SUSD3, IL18, MAL2, and CDKN1C comprised the Model2. NK cell activation was most relevant to lactate metabolism. The combined prognostic model outperformed the individual model, with the area under the curve ranging from 0.7 to 0.8 in all three cohorts. The lactate metabolism-related combination model assisted in evaluating breast cancer prognosis, providing new insights for treatment, particularly immunotherapy. |
format | Online Article Text |
id | pubmed-9794285 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-97942852022-12-28 Breast cancer combined prognostic model based on lactate metabolism genes Lu, Na Guan, Xiao Bao, Wei Fan, Zongyao Zhang, Jianping Medicine (Baltimore) 5700 To investigate the impact of lactate metabolism genes, lactate metabolism-related genes (LMRG), and immune infiltrating cells on the prognosis of breast cancer. LMRG was identified via single-cell sequencing. Immune cell infiltration was obtained by the CIBERSORT method. The prognostic genes were chosen by cox regression and the least absolute selection operator approach. lactate metabolism-associated immune-infiltrating cells was determined by difference analysis. The GSE20685 dataset was used as an external validation cohort. The model’s prognostic usefulness was evaluated utilizing survival, immunological microenvironment, and drug sensitivity assessments. NDUFAF6 was most associated with breast cancer prognosis. We obtained a total of 450 LMRG. SUSD3, IL18, MAL2, and CDKN1C comprised the Model2. NK cell activation was most relevant to lactate metabolism. The combined prognostic model outperformed the individual model, with the area under the curve ranging from 0.7 to 0.8 in all three cohorts. The lactate metabolism-related combination model assisted in evaluating breast cancer prognosis, providing new insights for treatment, particularly immunotherapy. Lippincott Williams & Wilkins 2022-12-23 /pmc/articles/PMC9794285/ /pubmed/36595824 http://dx.doi.org/10.1097/MD.0000000000032485 Text en Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | 5700 Lu, Na Guan, Xiao Bao, Wei Fan, Zongyao Zhang, Jianping Breast cancer combined prognostic model based on lactate metabolism genes |
title | Breast cancer combined prognostic model based on lactate metabolism genes |
title_full | Breast cancer combined prognostic model based on lactate metabolism genes |
title_fullStr | Breast cancer combined prognostic model based on lactate metabolism genes |
title_full_unstemmed | Breast cancer combined prognostic model based on lactate metabolism genes |
title_short | Breast cancer combined prognostic model based on lactate metabolism genes |
title_sort | breast cancer combined prognostic model based on lactate metabolism genes |
topic | 5700 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9794285/ https://www.ncbi.nlm.nih.gov/pubmed/36595824 http://dx.doi.org/10.1097/MD.0000000000032485 |
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