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Analysis of the regulatory mechanisms of prognostic immune factors in thyroid cancer

OBJECTIVE: To explore the regulatory mechanism of immune prognostic factors in thyroid cancer. METHODS: Based on the TCGA database and GEO database, this study used bioinformatics methods to study the potential regulatory mechanism of thyroid cancer prognosis, analyzed the differentially expressed g...

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Autores principales: Tian, Yin, Xie, Tao, Sun, Xue
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9795211/
https://www.ncbi.nlm.nih.gov/pubmed/36591507
http://dx.doi.org/10.3389/fonc.2022.1059591
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author Tian, Yin
Xie, Tao
Sun, Xue
author_facet Tian, Yin
Xie, Tao
Sun, Xue
author_sort Tian, Yin
collection PubMed
description OBJECTIVE: To explore the regulatory mechanism of immune prognostic factors in thyroid cancer. METHODS: Based on the TCGA database and GEO database, this study used bioinformatics methods to study the potential regulatory mechanism of thyroid cancer prognosis, analyzed the differentially expressed genes and differential miRNAs between thyroid cancer and normal paracancerous tissues by R software, and constructed lasso risk factors. The immune prognostic factors of thyroid cancer were obtained from the model, and the miRDB website was used to predict the possibility of differential miRNA target binding of the immune prognostic factors and correlation analysis was performed, and finally verified by cell experiments. RESULTS: There were 1413 differentially expressed genes between thyroid cancer and normal paracancerous tissues, among which 21 immune-related genes were prognostic factors with significant differences in expression; lasso risk model obtained AKAP12, APOC1, TIMP3, ADAMTS9, ANK2, HTRA3, SYNDIG1 , ADAMTS5 and DACT1 were nine prognostic factors. A total of 58 differential miRNAs were found in thyroid cancer tissues and non-cancerous tissues. The possibility of differential miRNA targeting and binding of immune prognostic factors on the miRDB website and cell experiments was analyzed. CONCLUSIONS: The potential miRNA regulatory mechanism of immune prognostic factors in thyroid cancer has been explored.
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spelling pubmed-97952112022-12-29 Analysis of the regulatory mechanisms of prognostic immune factors in thyroid cancer Tian, Yin Xie, Tao Sun, Xue Front Oncol Oncology OBJECTIVE: To explore the regulatory mechanism of immune prognostic factors in thyroid cancer. METHODS: Based on the TCGA database and GEO database, this study used bioinformatics methods to study the potential regulatory mechanism of thyroid cancer prognosis, analyzed the differentially expressed genes and differential miRNAs between thyroid cancer and normal paracancerous tissues by R software, and constructed lasso risk factors. The immune prognostic factors of thyroid cancer were obtained from the model, and the miRDB website was used to predict the possibility of differential miRNA target binding of the immune prognostic factors and correlation analysis was performed, and finally verified by cell experiments. RESULTS: There were 1413 differentially expressed genes between thyroid cancer and normal paracancerous tissues, among which 21 immune-related genes were prognostic factors with significant differences in expression; lasso risk model obtained AKAP12, APOC1, TIMP3, ADAMTS9, ANK2, HTRA3, SYNDIG1 , ADAMTS5 and DACT1 were nine prognostic factors. A total of 58 differential miRNAs were found in thyroid cancer tissues and non-cancerous tissues. The possibility of differential miRNA targeting and binding of immune prognostic factors on the miRDB website and cell experiments was analyzed. CONCLUSIONS: The potential miRNA regulatory mechanism of immune prognostic factors in thyroid cancer has been explored. Frontiers Media S.A. 2022-12-14 /pmc/articles/PMC9795211/ /pubmed/36591507 http://dx.doi.org/10.3389/fonc.2022.1059591 Text en Copyright © 2022 Tian, Xie and Sun https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Tian, Yin
Xie, Tao
Sun, Xue
Analysis of the regulatory mechanisms of prognostic immune factors in thyroid cancer
title Analysis of the regulatory mechanisms of prognostic immune factors in thyroid cancer
title_full Analysis of the regulatory mechanisms of prognostic immune factors in thyroid cancer
title_fullStr Analysis of the regulatory mechanisms of prognostic immune factors in thyroid cancer
title_full_unstemmed Analysis of the regulatory mechanisms of prognostic immune factors in thyroid cancer
title_short Analysis of the regulatory mechanisms of prognostic immune factors in thyroid cancer
title_sort analysis of the regulatory mechanisms of prognostic immune factors in thyroid cancer
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9795211/
https://www.ncbi.nlm.nih.gov/pubmed/36591507
http://dx.doi.org/10.3389/fonc.2022.1059591
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