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A deep learning framework integrating MRI image preprocessing methods for brain tumor segmentation and classification

Glioma grading is critical in treatment planning and prognosis. This study aims to address this issue through MRI-based classification to develop an accurate model for glioma diagnosis. Here, we employed a deep learning pipeline with three essential steps: (1) MRI images were segmented using preproc...

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Detalles Bibliográficos
Autores principales: Dang, Khiet, Vo, Toi, Ngo, Lua, Ha, Huong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9795279/
https://www.ncbi.nlm.nih.gov/pubmed/36590099
http://dx.doi.org/10.1016/j.ibneur.2022.10.014
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author Dang, Khiet
Vo, Toi
Ngo, Lua
Ha, Huong
author_facet Dang, Khiet
Vo, Toi
Ngo, Lua
Ha, Huong
author_sort Dang, Khiet
collection PubMed
description Glioma grading is critical in treatment planning and prognosis. This study aims to address this issue through MRI-based classification to develop an accurate model for glioma diagnosis. Here, we employed a deep learning pipeline with three essential steps: (1) MRI images were segmented using preprocessing approaches and UNet architecture, (2) brain tumor regions were extracted using segmentation, then (3) high-grade gliomas and low-grade gliomas were classified using the VGG and GoogleNet implementations. Among the additional preprocessing techniques used in conjunction with the segmentation task, the combination of data augmentation and Window Setting Optimization was found to be the most effective tool, resulting in the Dice coefficient of 0.82, 0.91, and 0.72 for enhancing tumor, whole tumor, and tumor core, respectively. While most of the proposed models achieve comparable accuracies of about 93 % on the testing dataset, the pipeline of VGG combined with UNet segmentation obtains the highest accuracy of 97.44 %. In conclusion, the presented architecture illustrates a realistic model for detecting gliomas; moreover, it emphasizes the significance of data augmentation and segmentation in improving model performance.
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spelling pubmed-97952792022-12-29 A deep learning framework integrating MRI image preprocessing methods for brain tumor segmentation and classification Dang, Khiet Vo, Toi Ngo, Lua Ha, Huong IBRO Neurosci Rep Research Paper Glioma grading is critical in treatment planning and prognosis. This study aims to address this issue through MRI-based classification to develop an accurate model for glioma diagnosis. Here, we employed a deep learning pipeline with three essential steps: (1) MRI images were segmented using preprocessing approaches and UNet architecture, (2) brain tumor regions were extracted using segmentation, then (3) high-grade gliomas and low-grade gliomas were classified using the VGG and GoogleNet implementations. Among the additional preprocessing techniques used in conjunction with the segmentation task, the combination of data augmentation and Window Setting Optimization was found to be the most effective tool, resulting in the Dice coefficient of 0.82, 0.91, and 0.72 for enhancing tumor, whole tumor, and tumor core, respectively. While most of the proposed models achieve comparable accuracies of about 93 % on the testing dataset, the pipeline of VGG combined with UNet segmentation obtains the highest accuracy of 97.44 %. In conclusion, the presented architecture illustrates a realistic model for detecting gliomas; moreover, it emphasizes the significance of data augmentation and segmentation in improving model performance. Elsevier 2022-11-07 /pmc/articles/PMC9795279/ /pubmed/36590099 http://dx.doi.org/10.1016/j.ibneur.2022.10.014 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Paper
Dang, Khiet
Vo, Toi
Ngo, Lua
Ha, Huong
A deep learning framework integrating MRI image preprocessing methods for brain tumor segmentation and classification
title A deep learning framework integrating MRI image preprocessing methods for brain tumor segmentation and classification
title_full A deep learning framework integrating MRI image preprocessing methods for brain tumor segmentation and classification
title_fullStr A deep learning framework integrating MRI image preprocessing methods for brain tumor segmentation and classification
title_full_unstemmed A deep learning framework integrating MRI image preprocessing methods for brain tumor segmentation and classification
title_short A deep learning framework integrating MRI image preprocessing methods for brain tumor segmentation and classification
title_sort deep learning framework integrating mri image preprocessing methods for brain tumor segmentation and classification
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9795279/
https://www.ncbi.nlm.nih.gov/pubmed/36590099
http://dx.doi.org/10.1016/j.ibneur.2022.10.014
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