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An automated method for developing search strategies for systematic review using Natural Language Processing (NLP)
The design and implementation of systematic reviews and meta-analyses are often hampered by high financial costs, significant time commitment, and biases due to researchers' familiarity with studies. We proposed and implemented a fast and standardized method for search term selection using Natu...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9795520/ https://www.ncbi.nlm.nih.gov/pubmed/36590320 http://dx.doi.org/10.1016/j.mex.2022.101935 |
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author | Kwabena, Antwi Effah Wiafe, Owusu-Banahene John, Boakye-Danquah Bernard, Asare Boateng, Frimpong A.F. |
author_facet | Kwabena, Antwi Effah Wiafe, Owusu-Banahene John, Boakye-Danquah Bernard, Asare Boateng, Frimpong A.F. |
author_sort | Kwabena, Antwi Effah |
collection | PubMed |
description | The design and implementation of systematic reviews and meta-analyses are often hampered by high financial costs, significant time commitment, and biases due to researchers' familiarity with studies. We proposed and implemented a fast and standardized method for search term selection using Natural Language Processing (NLP) and co-occurrence networks to identify relevant search terms to reduce biases in conducting systematic reviews and meta-analyses. • The method was implemented using Python packaged dubbed Ananse, which is benchmarked on the search terms strategy for naïve search proposed by Grames et al. (2019) written in “R”. Ananse was applied to a case example towards finding search terms to implement a systematic literature review on cumulative effect studies on forest ecosystems. • The software automatically corrected and classified 100% of the duplicate articles identified by manual deduplication. Ananse was applied to the cumulative effects assessment case study, but it can serve as a general-purpose, open-source software system that can support extensive systematic reviews within a relatively short period with reduced biases. • Besides generating keywords, Ananse can act as middleware or a data converter for integrating multiple datasets into a database. |
format | Online Article Text |
id | pubmed-9795520 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-97955202022-12-29 An automated method for developing search strategies for systematic review using Natural Language Processing (NLP) Kwabena, Antwi Effah Wiafe, Owusu-Banahene John, Boakye-Danquah Bernard, Asare Boateng, Frimpong A.F. MethodsX Method Article The design and implementation of systematic reviews and meta-analyses are often hampered by high financial costs, significant time commitment, and biases due to researchers' familiarity with studies. We proposed and implemented a fast and standardized method for search term selection using Natural Language Processing (NLP) and co-occurrence networks to identify relevant search terms to reduce biases in conducting systematic reviews and meta-analyses. • The method was implemented using Python packaged dubbed Ananse, which is benchmarked on the search terms strategy for naïve search proposed by Grames et al. (2019) written in “R”. Ananse was applied to a case example towards finding search terms to implement a systematic literature review on cumulative effect studies on forest ecosystems. • The software automatically corrected and classified 100% of the duplicate articles identified by manual deduplication. Ananse was applied to the cumulative effects assessment case study, but it can serve as a general-purpose, open-source software system that can support extensive systematic reviews within a relatively short period with reduced biases. • Besides generating keywords, Ananse can act as middleware or a data converter for integrating multiple datasets into a database. Elsevier 2022-11-23 /pmc/articles/PMC9795520/ /pubmed/36590320 http://dx.doi.org/10.1016/j.mex.2022.101935 Text en Crown Copyright © 2022 Published by Elsevier B.V. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Method Article Kwabena, Antwi Effah Wiafe, Owusu-Banahene John, Boakye-Danquah Bernard, Asare Boateng, Frimpong A.F. An automated method for developing search strategies for systematic review using Natural Language Processing (NLP) |
title | An automated method for developing search strategies for systematic review using Natural Language Processing (NLP) |
title_full | An automated method for developing search strategies for systematic review using Natural Language Processing (NLP) |
title_fullStr | An automated method for developing search strategies for systematic review using Natural Language Processing (NLP) |
title_full_unstemmed | An automated method for developing search strategies for systematic review using Natural Language Processing (NLP) |
title_short | An automated method for developing search strategies for systematic review using Natural Language Processing (NLP) |
title_sort | automated method for developing search strategies for systematic review using natural language processing (nlp) |
topic | Method Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9795520/ https://www.ncbi.nlm.nih.gov/pubmed/36590320 http://dx.doi.org/10.1016/j.mex.2022.101935 |
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