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A population-based study of precision health assessments using multi-omics network-derived biological functional modules

Recent technological advances in multi-omics and bioinformatics provide an opportunity to develop precision health assessments, which require big data and relevant bioinformatic methods. Here we collect multi-omics data from 4,277 individuals. We calculate the correlations between pairwise features...

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Autores principales: Zhang, Wei, Wan, Ziyun, Li, Xiaoyu, Li, Rui, Luo, Lihua, Song, Zijun, Miao, Yu, Li, Zhiming, Wang, Shiyu, Shan, Ying, Li, Yan, Chen, Bangwei, Zhen, Hefu, Sun, Yuzhe, Fang, Mingyan, Ding, Jiahong, Yan, Yizhen, Zong, Yang, Wang, Zhen, Zhang, Wenwei, Yang, Huanming, Yang, Shuang, Wang, Jian, Jin, Xin, Wang, Ru, Chen, Peijie, Min, Junxia, Zeng, Yi, Li, Tao, Xu, Xun, Nie, Chao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9798030/
https://www.ncbi.nlm.nih.gov/pubmed/36493776
http://dx.doi.org/10.1016/j.xcrm.2022.100847
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author Zhang, Wei
Wan, Ziyun
Li, Xiaoyu
Li, Rui
Luo, Lihua
Song, Zijun
Miao, Yu
Li, Zhiming
Wang, Shiyu
Shan, Ying
Li, Yan
Chen, Bangwei
Zhen, Hefu
Sun, Yuzhe
Fang, Mingyan
Ding, Jiahong
Yan, Yizhen
Zong, Yang
Wang, Zhen
Zhang, Wenwei
Yang, Huanming
Yang, Shuang
Wang, Jian
Jin, Xin
Wang, Ru
Chen, Peijie
Min, Junxia
Zeng, Yi
Li, Tao
Xu, Xun
Nie, Chao
author_facet Zhang, Wei
Wan, Ziyun
Li, Xiaoyu
Li, Rui
Luo, Lihua
Song, Zijun
Miao, Yu
Li, Zhiming
Wang, Shiyu
Shan, Ying
Li, Yan
Chen, Bangwei
Zhen, Hefu
Sun, Yuzhe
Fang, Mingyan
Ding, Jiahong
Yan, Yizhen
Zong, Yang
Wang, Zhen
Zhang, Wenwei
Yang, Huanming
Yang, Shuang
Wang, Jian
Jin, Xin
Wang, Ru
Chen, Peijie
Min, Junxia
Zeng, Yi
Li, Tao
Xu, Xun
Nie, Chao
author_sort Zhang, Wei
collection PubMed
description Recent technological advances in multi-omics and bioinformatics provide an opportunity to develop precision health assessments, which require big data and relevant bioinformatic methods. Here we collect multi-omics data from 4,277 individuals. We calculate the correlations between pairwise features from cross-sectional data and then generate 11 biological functional modules (BFMs) in males and 12 BFMs in females using a community detection algorithm. Using the features in the BFM associated with cardiometabolic health, carotid plaques can be predicted accurately in an independent dataset. We developed a model by comparing individual data with the health baseline in BFMs to assess health status (BFM-ash). Then we apply the model to chronic patients and modify the BFM-ash model to assess the effects of consuming grape seed extract as a dietary supplement. Finally, anomalous BFMs are identified for each subject. Our BFMs and BFM-ash model have huge prospects for application in precision health assessment.
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spelling pubmed-97980302022-12-30 A population-based study of precision health assessments using multi-omics network-derived biological functional modules Zhang, Wei Wan, Ziyun Li, Xiaoyu Li, Rui Luo, Lihua Song, Zijun Miao, Yu Li, Zhiming Wang, Shiyu Shan, Ying Li, Yan Chen, Bangwei Zhen, Hefu Sun, Yuzhe Fang, Mingyan Ding, Jiahong Yan, Yizhen Zong, Yang Wang, Zhen Zhang, Wenwei Yang, Huanming Yang, Shuang Wang, Jian Jin, Xin Wang, Ru Chen, Peijie Min, Junxia Zeng, Yi Li, Tao Xu, Xun Nie, Chao Cell Rep Med Article Recent technological advances in multi-omics and bioinformatics provide an opportunity to develop precision health assessments, which require big data and relevant bioinformatic methods. Here we collect multi-omics data from 4,277 individuals. We calculate the correlations between pairwise features from cross-sectional data and then generate 11 biological functional modules (BFMs) in males and 12 BFMs in females using a community detection algorithm. Using the features in the BFM associated with cardiometabolic health, carotid plaques can be predicted accurately in an independent dataset. We developed a model by comparing individual data with the health baseline in BFMs to assess health status (BFM-ash). Then we apply the model to chronic patients and modify the BFM-ash model to assess the effects of consuming grape seed extract as a dietary supplement. Finally, anomalous BFMs are identified for each subject. Our BFMs and BFM-ash model have huge prospects for application in precision health assessment. Elsevier 2022-12-08 /pmc/articles/PMC9798030/ /pubmed/36493776 http://dx.doi.org/10.1016/j.xcrm.2022.100847 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Zhang, Wei
Wan, Ziyun
Li, Xiaoyu
Li, Rui
Luo, Lihua
Song, Zijun
Miao, Yu
Li, Zhiming
Wang, Shiyu
Shan, Ying
Li, Yan
Chen, Bangwei
Zhen, Hefu
Sun, Yuzhe
Fang, Mingyan
Ding, Jiahong
Yan, Yizhen
Zong, Yang
Wang, Zhen
Zhang, Wenwei
Yang, Huanming
Yang, Shuang
Wang, Jian
Jin, Xin
Wang, Ru
Chen, Peijie
Min, Junxia
Zeng, Yi
Li, Tao
Xu, Xun
Nie, Chao
A population-based study of precision health assessments using multi-omics network-derived biological functional modules
title A population-based study of precision health assessments using multi-omics network-derived biological functional modules
title_full A population-based study of precision health assessments using multi-omics network-derived biological functional modules
title_fullStr A population-based study of precision health assessments using multi-omics network-derived biological functional modules
title_full_unstemmed A population-based study of precision health assessments using multi-omics network-derived biological functional modules
title_short A population-based study of precision health assessments using multi-omics network-derived biological functional modules
title_sort population-based study of precision health assessments using multi-omics network-derived biological functional modules
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9798030/
https://www.ncbi.nlm.nih.gov/pubmed/36493776
http://dx.doi.org/10.1016/j.xcrm.2022.100847
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