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A population-based study of precision health assessments using multi-omics network-derived biological functional modules
Recent technological advances in multi-omics and bioinformatics provide an opportunity to develop precision health assessments, which require big data and relevant bioinformatic methods. Here we collect multi-omics data from 4,277 individuals. We calculate the correlations between pairwise features...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9798030/ https://www.ncbi.nlm.nih.gov/pubmed/36493776 http://dx.doi.org/10.1016/j.xcrm.2022.100847 |
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author | Zhang, Wei Wan, Ziyun Li, Xiaoyu Li, Rui Luo, Lihua Song, Zijun Miao, Yu Li, Zhiming Wang, Shiyu Shan, Ying Li, Yan Chen, Bangwei Zhen, Hefu Sun, Yuzhe Fang, Mingyan Ding, Jiahong Yan, Yizhen Zong, Yang Wang, Zhen Zhang, Wenwei Yang, Huanming Yang, Shuang Wang, Jian Jin, Xin Wang, Ru Chen, Peijie Min, Junxia Zeng, Yi Li, Tao Xu, Xun Nie, Chao |
author_facet | Zhang, Wei Wan, Ziyun Li, Xiaoyu Li, Rui Luo, Lihua Song, Zijun Miao, Yu Li, Zhiming Wang, Shiyu Shan, Ying Li, Yan Chen, Bangwei Zhen, Hefu Sun, Yuzhe Fang, Mingyan Ding, Jiahong Yan, Yizhen Zong, Yang Wang, Zhen Zhang, Wenwei Yang, Huanming Yang, Shuang Wang, Jian Jin, Xin Wang, Ru Chen, Peijie Min, Junxia Zeng, Yi Li, Tao Xu, Xun Nie, Chao |
author_sort | Zhang, Wei |
collection | PubMed |
description | Recent technological advances in multi-omics and bioinformatics provide an opportunity to develop precision health assessments, which require big data and relevant bioinformatic methods. Here we collect multi-omics data from 4,277 individuals. We calculate the correlations between pairwise features from cross-sectional data and then generate 11 biological functional modules (BFMs) in males and 12 BFMs in females using a community detection algorithm. Using the features in the BFM associated with cardiometabolic health, carotid plaques can be predicted accurately in an independent dataset. We developed a model by comparing individual data with the health baseline in BFMs to assess health status (BFM-ash). Then we apply the model to chronic patients and modify the BFM-ash model to assess the effects of consuming grape seed extract as a dietary supplement. Finally, anomalous BFMs are identified for each subject. Our BFMs and BFM-ash model have huge prospects for application in precision health assessment. |
format | Online Article Text |
id | pubmed-9798030 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-97980302022-12-30 A population-based study of precision health assessments using multi-omics network-derived biological functional modules Zhang, Wei Wan, Ziyun Li, Xiaoyu Li, Rui Luo, Lihua Song, Zijun Miao, Yu Li, Zhiming Wang, Shiyu Shan, Ying Li, Yan Chen, Bangwei Zhen, Hefu Sun, Yuzhe Fang, Mingyan Ding, Jiahong Yan, Yizhen Zong, Yang Wang, Zhen Zhang, Wenwei Yang, Huanming Yang, Shuang Wang, Jian Jin, Xin Wang, Ru Chen, Peijie Min, Junxia Zeng, Yi Li, Tao Xu, Xun Nie, Chao Cell Rep Med Article Recent technological advances in multi-omics and bioinformatics provide an opportunity to develop precision health assessments, which require big data and relevant bioinformatic methods. Here we collect multi-omics data from 4,277 individuals. We calculate the correlations between pairwise features from cross-sectional data and then generate 11 biological functional modules (BFMs) in males and 12 BFMs in females using a community detection algorithm. Using the features in the BFM associated with cardiometabolic health, carotid plaques can be predicted accurately in an independent dataset. We developed a model by comparing individual data with the health baseline in BFMs to assess health status (BFM-ash). Then we apply the model to chronic patients and modify the BFM-ash model to assess the effects of consuming grape seed extract as a dietary supplement. Finally, anomalous BFMs are identified for each subject. Our BFMs and BFM-ash model have huge prospects for application in precision health assessment. Elsevier 2022-12-08 /pmc/articles/PMC9798030/ /pubmed/36493776 http://dx.doi.org/10.1016/j.xcrm.2022.100847 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Zhang, Wei Wan, Ziyun Li, Xiaoyu Li, Rui Luo, Lihua Song, Zijun Miao, Yu Li, Zhiming Wang, Shiyu Shan, Ying Li, Yan Chen, Bangwei Zhen, Hefu Sun, Yuzhe Fang, Mingyan Ding, Jiahong Yan, Yizhen Zong, Yang Wang, Zhen Zhang, Wenwei Yang, Huanming Yang, Shuang Wang, Jian Jin, Xin Wang, Ru Chen, Peijie Min, Junxia Zeng, Yi Li, Tao Xu, Xun Nie, Chao A population-based study of precision health assessments using multi-omics network-derived biological functional modules |
title | A population-based study of precision health assessments using multi-omics network-derived biological functional modules |
title_full | A population-based study of precision health assessments using multi-omics network-derived biological functional modules |
title_fullStr | A population-based study of precision health assessments using multi-omics network-derived biological functional modules |
title_full_unstemmed | A population-based study of precision health assessments using multi-omics network-derived biological functional modules |
title_short | A population-based study of precision health assessments using multi-omics network-derived biological functional modules |
title_sort | population-based study of precision health assessments using multi-omics network-derived biological functional modules |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9798030/ https://www.ncbi.nlm.nih.gov/pubmed/36493776 http://dx.doi.org/10.1016/j.xcrm.2022.100847 |
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