Cargando…

Graph identification of proteins in tomograms (GRIP‐Tomo)

In this study, we present a method of pattern mining based on network theory that enables the identification of protein structures or complexes from synthetic volume densities, without the knowledge of predefined templates or human biases for refinement. We hypothesized that the topological connecti...

Descripción completa

Detalles Bibliográficos
Autores principales:	George, August, Kim, Doo Nam, Moser, Trevor, Gildea, Ian T., Evans, James E., Cheung, Margaret S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley & Sons, Inc. 2023
Materias:	Full‐length Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9798246/ https://www.ncbi.nlm.nih.gov/pubmed/36482866 http://dx.doi.org/10.1002/pro.4538

Ejemplares similares

Learning structural heterogeneity from cryo-electron sub-tomograms with tomoDRGN
por: Powell, Barrett M., et al.
Publicado: (2023)

TomoTwin: generalized 3D localization of macromolecules in cryo-electron tomograms with structural data mining
por: Rice, Gavin, et al.
Publicado: (2023)

Continuous facility location on graphs
por: Hartmann, Tim A., et al.
Publicado: (2021)

Development of Grip self-help: An online patient-tailored self-help intervention for functional somatic symptoms in primary care
por: Rosmalen, Judith G.M., et al.
Publicado: (2019)

Identification, Characterization, and Modeling of a Bioinsecticide Protein Isolated from Scorpion Venom gland: A Three-Finger Protein
por: Baradaran, Masoumeh, et al.
Publicado: (2023)

Recalculation of dose for each fraction of treatment on TomoTherapy
por: Thomas, Simon J, et al.
Publicado: (2016)

Bounds on entanglement dimensions and quantum graph parameters via noncommutative polynomial optimization
por: Gribling, Sander, et al.
Publicado: (2018)

Identification and Evaluation of Novel Drug Targets against the Human Fungal Pathogen Aspergillus fumigatus with Elaboration on the Possible Role of RNA-Binding Protein
por: Malekzadeh, Saeid, et al.
Publicado: (2017)

Identification of Two Novel Mutations in KDM3A Regulatory Gene in Iranian Infertile Males
por: Hojati, Zohreh, et al.
Publicado: (2019)

Molecular Identification and Antifungal Susceptibility Pattern of Non-albicans Candida Species Isolated from Vulvovaginal Candidiasis
por: Nejat, Ziba Abbasi, et al.
Publicado: (2018)

In silico Identification of Hypoxic Signature followed by reverse transcription-quantitative PCR Validation in Cancer Cell Lines
por: Shayan, Sara, et al.
Publicado: (2023)

Associations between symptoms of problematic smartphone, Facebook, WhatsApp, and Instagram use: An item-level exploratory graph analysis perspective
por: Rozgonjuk, Dmitri, et al.
Publicado: (2020)

A wavelet-based estimator of the degrees of freedom in denoised fMRI time series for probabilistic testing of functional connectivity and brain graphs
por: Patel, Ameera X., et al.
Publicado: (2016)

Volumetric macromolecule identification in cryo-electron tomograms using capsule networks
por: Hajarolasvadi, Noushin, et al.
Publicado: (2022)

Plackett-Burman Design and Response Surface Optimization of Medium Trace Nutrients for Glycolipopeptide Biosurfactant Production
por: Ekpenyong, Maurice George, et al.
Publicado: (2017)

A Novel Hyperthermostable Recombinant Protein Nanocage
por: Ahmadyousefi, Yaghoub, et al.
Publicado: (2022)

Physicochemical Position-Dependent Properties in the Protein Secondary Structures
por: Saghapour, Ehsan, et al.
Publicado: (2019)

Identification and in silico bioinformatics analysis of PR10 proteins in cashew nut
por: Bastiaan‐Net, Shanna, et al.
Publicado: (2020)

Object reconstruction from focused positron tomograms
por: Townsend, D, et al.
Publicado: (1978)

Phosphorylation of Staphylococcus aureus Protein-Tyrosine Kinase Affects the Function of Glucokinase and Biofilm Formation
por: Vasu, Dudipeta, et al.
Publicado: (2017)

Affinity Based Nano-Magnetic Particles for Purification of Recombinant Proteins in Form of Inclusion Body
por: Seyedinkhorasani, Masoud, et al.
Publicado: (2020)

Gene Expression of Promyelocytic Leukemia Proteins and IFN-γ Is Reduced in Rotavirus-Infected Children
por: Mohammed, Ahmed Jasim, et al.
Publicado: (2020)

In silico Analysis of Pasteurella multocida PlpE Protein Epitopes As Novel Subunit Vaccine Candidates
por: Mostaan, Saied, et al.
Publicado: (2021)

Quality Control of Widely Used Therapeutic Recombinant Proteins by a Novel Real-Time PCR Approach
por: Mamnoon, Babak, et al.
Publicado: (2016)

Targeted Deletion of Los1 Homologue Affects the Production of a Recombinant Model Protein in Pichia pastoris
por: Zarei, Najmeh, et al.
Publicado: (2021)

Recombinant Production of a Novel Fusion Protein: Listeriolysin O Fragment Fused to S1 Subunit of Pertussis Toxin
por: Forghani, Hossein, et al.
Publicado: (2021)

Production of an Antibody Fragment (scFv) Targeting PcrV Protein of Pseudomonas aeruginosa in Fed-Batch Cultivation Mode
por: Karam, Saba, et al.
Publicado: (2021)

Identification of novel inhibitory metabolites and impact verification on growth and protein synthesis in mammalian cells
por: Kuang, Bingyu, et al.
Publicado: (2021)

The identification of novel promoters and terminators for protein expression and metabolic engineering applications in Kluyveromyces marxianus
por: Kumar, Pradeep, et al.
Publicado: (2021)

Molecular Cloning and Immunogenicity Evaluation of PpiC, GelE, and VS87_01105 Proteins of Enterococcus faecalis as Vaccine Candidates
por: Kazemian, Hamid, et al.
Publicado: (2019)

Expression and Secretion of Cyan Fluorescent Protein (CFP) in B. subtilis using the Chitinase Promoter from Bacillus pumilus SG2
por: Shali, Abbas, et al.
Publicado: (2017)

Evaluation of an Albumin-Binding Domain Protein Fused to Recombinant Human IL-2 and Its Effects on the Bioactivity and Serum Half-Life of the Cytokine
por: Adabi, Elham, et al.
Publicado: (2017)

Truncated Core/NS3 Fusion Protein of HCV Adjuvanted with Outer Membrane Vesicles of Neisseria meningitidis Serogroup B: Potent Inducer of the Murine Immune System
por: Hekmat, Soheila, et al.
Publicado: (2019)

Proteomics Profiling of Chimeric-Truncated Tissue Plasminogen activator Producing- Chinese Hamster Ovary Cells Cultivated in a Chemically Defined Medium Supplemented with Protein Hydrolysates
por: Azarian, Bahareh, et al.
Publicado: (2017)

Serum Antibodies against Helicobacter pylori Neutrophil Activating Protein in Carriers of IL-4 C-590T Genetic Polymorphism Amplify the Risk of Gastritis and Gastric Cancer
por: Talebkhan, Yeganeh, et al.
Publicado: (2017)

Carvacrol and Thymol Attenuate Cytotoxicity Induced by Amyloid β(25-35 )via Activating Protein Kinase C and Inhibiting Oxidative Stress in PC12 Cells
por: Azizi, Zahra, et al.
Publicado: (2020)

Identification of 121 variants of honey bee Vitellogenin protein sequences with structural differences at functional sites
por: Leipart, Vilde, et al.
Publicado: (2022)

Identification of potent small molecule inhibitors of SARS-CoV-2 entry
por: Mediouni, Sonia, et al.
Publicado: (2022)

Correlation between gray values of cone-beam computed tomograms and Hounsfield units of computed tomograms: A systematic review and meta-analysis
por: Selvaraj, Abirami, et al.
Publicado: (2022)

Accurate Identification of Tomograms of Lung Nodules Using CNN: Influence of the Optimizer, Preprocessing and Segmentation
por: Loeza Mejía, Cecilia Irene, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_9c2mbde01ffne1rrp2i49fdq67