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Identification of highly variable sequence fragments in unmapped reads for rapid bacterial genotyping

BACKGROUND: Bacterial genotyping is a crucial process in outbreak investigation and epidemiological studies. Several typing methods such as pulsed-field gel electrophoresis, multilocus sequence typing (MLST) and whole genome sequencing are currently used in routine clinical practice. However, these...

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Detalles Bibliográficos
Autores principales:	Nykrynova, Marketa, Barton, Vojtech, Bezdicek, Matej, Lengerova, Martina, Skutkova, Helena
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2022
Materias:	Methodology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9798552/ https://www.ncbi.nlm.nih.gov/pubmed/36581824 http://dx.doi.org/10.1186/s12864-022-08550-4

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