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Recalibrating probabilistic forecasts of epidemics

Distributional forecasts are important for a wide variety of applications, including forecasting epidemics. Often, forecasts are miscalibrated, or unreliable in assigning uncertainty to future events. We present a recalibration method that can be applied to a black-box forecaster given retrospective...

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Detalles Bibliográficos
Autores principales: Rumack, Aaron, Tibshirani, Ryan J., Rosenfeld, Roni
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9799311/
https://www.ncbi.nlm.nih.gov/pubmed/36520949
http://dx.doi.org/10.1371/journal.pcbi.1010771
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author Rumack, Aaron
Tibshirani, Ryan J.
Rosenfeld, Roni
author_facet Rumack, Aaron
Tibshirani, Ryan J.
Rosenfeld, Roni
author_sort Rumack, Aaron
collection PubMed
description Distributional forecasts are important for a wide variety of applications, including forecasting epidemics. Often, forecasts are miscalibrated, or unreliable in assigning uncertainty to future events. We present a recalibration method that can be applied to a black-box forecaster given retrospective forecasts and observations, as well as an extension to make this method more effective in recalibrating epidemic forecasts. This method is guaranteed to improve calibration and log score performance when trained and measured in-sample. We also prove that the increase in expected log score of a recalibrated forecaster is equal to the entropy of the PIT distribution. We apply this recalibration method to the 27 influenza forecasters in the FluSight Network and show that recalibration reliably improves forecast accuracy and calibration. This method, available on Github, is effective, robust, and easy to use as a post-processing tool to improve epidemic forecasts.
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spelling pubmed-97993112022-12-30 Recalibrating probabilistic forecasts of epidemics Rumack, Aaron Tibshirani, Ryan J. Rosenfeld, Roni PLoS Comput Biol Research Article Distributional forecasts are important for a wide variety of applications, including forecasting epidemics. Often, forecasts are miscalibrated, or unreliable in assigning uncertainty to future events. We present a recalibration method that can be applied to a black-box forecaster given retrospective forecasts and observations, as well as an extension to make this method more effective in recalibrating epidemic forecasts. This method is guaranteed to improve calibration and log score performance when trained and measured in-sample. We also prove that the increase in expected log score of a recalibrated forecaster is equal to the entropy of the PIT distribution. We apply this recalibration method to the 27 influenza forecasters in the FluSight Network and show that recalibration reliably improves forecast accuracy and calibration. This method, available on Github, is effective, robust, and easy to use as a post-processing tool to improve epidemic forecasts. Public Library of Science 2022-12-15 /pmc/articles/PMC9799311/ /pubmed/36520949 http://dx.doi.org/10.1371/journal.pcbi.1010771 Text en © 2022 Rumack et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Rumack, Aaron
Tibshirani, Ryan J.
Rosenfeld, Roni
Recalibrating probabilistic forecasts of epidemics
title Recalibrating probabilistic forecasts of epidemics
title_full Recalibrating probabilistic forecasts of epidemics
title_fullStr Recalibrating probabilistic forecasts of epidemics
title_full_unstemmed Recalibrating probabilistic forecasts of epidemics
title_short Recalibrating probabilistic forecasts of epidemics
title_sort recalibrating probabilistic forecasts of epidemics
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9799311/
https://www.ncbi.nlm.nih.gov/pubmed/36520949
http://dx.doi.org/10.1371/journal.pcbi.1010771
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