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Cuproptosis-associated lncRNAs discern prognosis and immune microenvironment in sarcoma victims

Cuproptosis is a fresh form of the copper-elesclomol-triggered, mitochondrial tricarboxylic acid (TCA) dependent cell death. Yet, the subsumed mechanism of cuproptosis-associated lncRNAs in carcinoma is not wholly clarified. Here, We appraised 580 cuproptosis-associated lncRNAs in sarcoma and therea...

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Autores principales: Chu, Binxiang, Zheng, Haihong, Zheng, Xiaohe, Feng, Xingbing, Hong, Zhenghua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9800909/
https://www.ncbi.nlm.nih.gov/pubmed/36589745
http://dx.doi.org/10.3389/fcell.2022.989882
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author Chu, Binxiang
Zheng, Haihong
Zheng, Xiaohe
Feng, Xingbing
Hong, Zhenghua
author_facet Chu, Binxiang
Zheng, Haihong
Zheng, Xiaohe
Feng, Xingbing
Hong, Zhenghua
author_sort Chu, Binxiang
collection PubMed
description Cuproptosis is a fresh form of the copper-elesclomol-triggered, mitochondrial tricarboxylic acid (TCA) dependent cell death. Yet, the subsumed mechanism of cuproptosis-associated lncRNAs in carcinoma is not wholly clarified. Here, We appraised 580 cuproptosis-associated lncRNAs in sarcoma and thereafter construed a module composing of 6 cuproptosis lncRNAs, entitled CuLncScore, utilizing a machine learning methodology. It could outstandingly discern the prognosis of patients in parallel with discriminating tumor immune microenvironment traits. Moreover, we simulate the classification system of cuproptosis lncRNAs by unsupervised learning method to facilitate differentiation of clinical denouement and immunotherapy modality options. Notably, Our Taizhou cohort validated the stability of CuLncScore and the classification system. Taking a step further, we checked these 6 cuproptosis lncRNAs by Quantitative real-time polymerase chain reaction (qRT-PCR) to ascertain their authenticity. All told, our investigations highlight that cuproptosis lncRNAs are involved in various components of sarcoma and assist in the formation of the tumor immune microenvironment. These results provide partial insights to further comprehend the molecular mechanisms of cuproptosis lncRNAs in sarcoma and could be helpful for the development of personalized therapeutic strategies targeting cuproptosis or cuproptosis lncRNAs.
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spelling pubmed-98009092022-12-31 Cuproptosis-associated lncRNAs discern prognosis and immune microenvironment in sarcoma victims Chu, Binxiang Zheng, Haihong Zheng, Xiaohe Feng, Xingbing Hong, Zhenghua Front Cell Dev Biol Cell and Developmental Biology Cuproptosis is a fresh form of the copper-elesclomol-triggered, mitochondrial tricarboxylic acid (TCA) dependent cell death. Yet, the subsumed mechanism of cuproptosis-associated lncRNAs in carcinoma is not wholly clarified. Here, We appraised 580 cuproptosis-associated lncRNAs in sarcoma and thereafter construed a module composing of 6 cuproptosis lncRNAs, entitled CuLncScore, utilizing a machine learning methodology. It could outstandingly discern the prognosis of patients in parallel with discriminating tumor immune microenvironment traits. Moreover, we simulate the classification system of cuproptosis lncRNAs by unsupervised learning method to facilitate differentiation of clinical denouement and immunotherapy modality options. Notably, Our Taizhou cohort validated the stability of CuLncScore and the classification system. Taking a step further, we checked these 6 cuproptosis lncRNAs by Quantitative real-time polymerase chain reaction (qRT-PCR) to ascertain their authenticity. All told, our investigations highlight that cuproptosis lncRNAs are involved in various components of sarcoma and assist in the formation of the tumor immune microenvironment. These results provide partial insights to further comprehend the molecular mechanisms of cuproptosis lncRNAs in sarcoma and could be helpful for the development of personalized therapeutic strategies targeting cuproptosis or cuproptosis lncRNAs. Frontiers Media S.A. 2022-12-16 /pmc/articles/PMC9800909/ /pubmed/36589745 http://dx.doi.org/10.3389/fcell.2022.989882 Text en Copyright © 2022 Chu, Zheng, Zheng, Feng and Hong. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Chu, Binxiang
Zheng, Haihong
Zheng, Xiaohe
Feng, Xingbing
Hong, Zhenghua
Cuproptosis-associated lncRNAs discern prognosis and immune microenvironment in sarcoma victims
title Cuproptosis-associated lncRNAs discern prognosis and immune microenvironment in sarcoma victims
title_full Cuproptosis-associated lncRNAs discern prognosis and immune microenvironment in sarcoma victims
title_fullStr Cuproptosis-associated lncRNAs discern prognosis and immune microenvironment in sarcoma victims
title_full_unstemmed Cuproptosis-associated lncRNAs discern prognosis and immune microenvironment in sarcoma victims
title_short Cuproptosis-associated lncRNAs discern prognosis and immune microenvironment in sarcoma victims
title_sort cuproptosis-associated lncrnas discern prognosis and immune microenvironment in sarcoma victims
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9800909/
https://www.ncbi.nlm.nih.gov/pubmed/36589745
http://dx.doi.org/10.3389/fcell.2022.989882
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