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NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization

The Network Makeup Artist (NORMA) is a web tool for interactive network annotation visualization and topological analysis, able to handle multiple networks and annotations simultaneously. Precalculated annotations (e.g., Gene Ontology, Pathway enrichment, community detection, or clustering results)...

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Detalles Bibliográficos
Autores principales: Koutrouli, Mikaela, Karatzas, Evangelos, Papanikolopoulou, Katerina, Pavlopoulos, Georgios A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9801029/
https://www.ncbi.nlm.nih.gov/pubmed/34171457
http://dx.doi.org/10.1016/j.gpb.2021.02.005
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author Koutrouli, Mikaela
Karatzas, Evangelos
Papanikolopoulou, Katerina
Pavlopoulos, Georgios A.
author_facet Koutrouli, Mikaela
Karatzas, Evangelos
Papanikolopoulou, Katerina
Pavlopoulos, Georgios A.
author_sort Koutrouli, Mikaela
collection PubMed
description The Network Makeup Artist (NORMA) is a web tool for interactive network annotation visualization and topological analysis, able to handle multiple networks and annotations simultaneously. Precalculated annotations (e.g., Gene Ontology, Pathway enrichment, community detection, or clustering results) can be uploaded and visualized in a network, either as colored pie-chart nodes or as color-filled areas in a 2D/3D Venn-diagram-like style. In the case where no annotation exists, algorithms for automated community detection are offered. Users can adjust the network views using standard layout algorithms or allow NORMA to slightly modify them for visually better group separation. Once a network view is set, users can interactively select and highlight any group of interest in order to generate publication-ready figures. Briefly, with NORMA, users can encode three types of information simultaneously. These are 1) the network, 2) the communities or annotations of interest, and 3) node categories or expression values. Finally, NORMA offers basic topological analysis and direct topological comparison across any of the selected networks. NORMA service is available at http://norma.pavlopouloslab.info, whereas the code is available at https://github.com/PavlopoulosLab/NORMA.
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spelling pubmed-98010292022-12-31 NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization Koutrouli, Mikaela Karatzas, Evangelos Papanikolopoulou, Katerina Pavlopoulos, Georgios A. Genomics Proteomics Bioinformatics Application Note The Network Makeup Artist (NORMA) is a web tool for interactive network annotation visualization and topological analysis, able to handle multiple networks and annotations simultaneously. Precalculated annotations (e.g., Gene Ontology, Pathway enrichment, community detection, or clustering results) can be uploaded and visualized in a network, either as colored pie-chart nodes or as color-filled areas in a 2D/3D Venn-diagram-like style. In the case where no annotation exists, algorithms for automated community detection are offered. Users can adjust the network views using standard layout algorithms or allow NORMA to slightly modify them for visually better group separation. Once a network view is set, users can interactively select and highlight any group of interest in order to generate publication-ready figures. Briefly, with NORMA, users can encode three types of information simultaneously. These are 1) the network, 2) the communities or annotations of interest, and 3) node categories or expression values. Finally, NORMA offers basic topological analysis and direct topological comparison across any of the selected networks. NORMA service is available at http://norma.pavlopouloslab.info, whereas the code is available at https://github.com/PavlopoulosLab/NORMA. Elsevier 2022-06 2021-06-24 /pmc/articles/PMC9801029/ /pubmed/34171457 http://dx.doi.org/10.1016/j.gpb.2021.02.005 Text en © 2022 Beijing Institute of Genomics https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Application Note
Koutrouli, Mikaela
Karatzas, Evangelos
Papanikolopoulou, Katerina
Pavlopoulos, Georgios A.
NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization
title NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization
title_full NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization
title_fullStr NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization
title_full_unstemmed NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization
title_short NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization
title_sort norma: the network makeup artist — a web tool for network annotation visualization
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9801029/
https://www.ncbi.nlm.nih.gov/pubmed/34171457
http://dx.doi.org/10.1016/j.gpb.2021.02.005
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