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Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides

The conformational properties of monosaccharides constitute fundamental features of oligosaccharides. While the energy landscape of monosaccharides can be altered by a specific biochemical environment or by chemical modifications, the analysis of resulting dynamic conformational equilibria is not fe...

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Detalles Bibliográficos
Autores principales: Jaeschke, Sven Ole, Lindhorst, Thisbe K., Auer, Alexander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9804333/
https://www.ncbi.nlm.nih.gov/pubmed/35754398
http://dx.doi.org/10.1002/chem.202201544
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author Jaeschke, Sven Ole
Lindhorst, Thisbe K.
Auer, Alexander
author_facet Jaeschke, Sven Ole
Lindhorst, Thisbe K.
Auer, Alexander
author_sort Jaeschke, Sven Ole
collection PubMed
description The conformational properties of monosaccharides constitute fundamental features of oligosaccharides. While the energy landscape of monosaccharides can be altered by a specific biochemical environment or by chemical modifications, the analysis of resulting dynamic conformational equilibria is not feasible by experimental means alone. In this work, a series of β‐d‐xylopyranosides is used to outline how a combination of experimental NMR parameters and computed molecular properties can be used to determine conformers and quantify the composition of conformational equilibria. We demonstrate that identifying the most stable conformers using energy calculations is challenging and computing of NMR shieldings is typically not sensitive enough. On the other hand, computed spin‐spin coupling constants for the xyloside ring can be used to unambiguously assign experimental NMR data of dynamic conformational equilibria and quantify the ratio of different conformers in the mixture. As a proof of principle, this procedure allowed to analyze a hitherto unknown dynamic equilibrium of a diamino‐xyloside as a precursor of a molecular switch.
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spelling pubmed-98043332023-01-03 Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides Jaeschke, Sven Ole Lindhorst, Thisbe K. Auer, Alexander Chemistry Research Articles The conformational properties of monosaccharides constitute fundamental features of oligosaccharides. While the energy landscape of monosaccharides can be altered by a specific biochemical environment or by chemical modifications, the analysis of resulting dynamic conformational equilibria is not feasible by experimental means alone. In this work, a series of β‐d‐xylopyranosides is used to outline how a combination of experimental NMR parameters and computed molecular properties can be used to determine conformers and quantify the composition of conformational equilibria. We demonstrate that identifying the most stable conformers using energy calculations is challenging and computing of NMR shieldings is typically not sensitive enough. On the other hand, computed spin‐spin coupling constants for the xyloside ring can be used to unambiguously assign experimental NMR data of dynamic conformational equilibria and quantify the ratio of different conformers in the mixture. As a proof of principle, this procedure allowed to analyze a hitherto unknown dynamic equilibrium of a diamino‐xyloside as a precursor of a molecular switch. John Wiley and Sons Inc. 2022-08-04 2022-10-07 /pmc/articles/PMC9804333/ /pubmed/35754398 http://dx.doi.org/10.1002/chem.202201544 Text en © 2022 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Jaeschke, Sven Ole
Lindhorst, Thisbe K.
Auer, Alexander
Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides
title Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides
title_full Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides
title_fullStr Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides
title_full_unstemmed Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides
title_short Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides
title_sort between two chairs: combination of theory and experiment for the determination of the conformational dynamics of xylosides
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9804333/
https://www.ncbi.nlm.nih.gov/pubmed/35754398
http://dx.doi.org/10.1002/chem.202201544
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