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Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides
The conformational properties of monosaccharides constitute fundamental features of oligosaccharides. While the energy landscape of monosaccharides can be altered by a specific biochemical environment or by chemical modifications, the analysis of resulting dynamic conformational equilibria is not fe...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9804333/ https://www.ncbi.nlm.nih.gov/pubmed/35754398 http://dx.doi.org/10.1002/chem.202201544 |
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author | Jaeschke, Sven Ole Lindhorst, Thisbe K. Auer, Alexander |
author_facet | Jaeschke, Sven Ole Lindhorst, Thisbe K. Auer, Alexander |
author_sort | Jaeschke, Sven Ole |
collection | PubMed |
description | The conformational properties of monosaccharides constitute fundamental features of oligosaccharides. While the energy landscape of monosaccharides can be altered by a specific biochemical environment or by chemical modifications, the analysis of resulting dynamic conformational equilibria is not feasible by experimental means alone. In this work, a series of β‐d‐xylopyranosides is used to outline how a combination of experimental NMR parameters and computed molecular properties can be used to determine conformers and quantify the composition of conformational equilibria. We demonstrate that identifying the most stable conformers using energy calculations is challenging and computing of NMR shieldings is typically not sensitive enough. On the other hand, computed spin‐spin coupling constants for the xyloside ring can be used to unambiguously assign experimental NMR data of dynamic conformational equilibria and quantify the ratio of different conformers in the mixture. As a proof of principle, this procedure allowed to analyze a hitherto unknown dynamic equilibrium of a diamino‐xyloside as a precursor of a molecular switch. |
format | Online Article Text |
id | pubmed-9804333 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98043332023-01-03 Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides Jaeschke, Sven Ole Lindhorst, Thisbe K. Auer, Alexander Chemistry Research Articles The conformational properties of monosaccharides constitute fundamental features of oligosaccharides. While the energy landscape of monosaccharides can be altered by a specific biochemical environment or by chemical modifications, the analysis of resulting dynamic conformational equilibria is not feasible by experimental means alone. In this work, a series of β‐d‐xylopyranosides is used to outline how a combination of experimental NMR parameters and computed molecular properties can be used to determine conformers and quantify the composition of conformational equilibria. We demonstrate that identifying the most stable conformers using energy calculations is challenging and computing of NMR shieldings is typically not sensitive enough. On the other hand, computed spin‐spin coupling constants for the xyloside ring can be used to unambiguously assign experimental NMR data of dynamic conformational equilibria and quantify the ratio of different conformers in the mixture. As a proof of principle, this procedure allowed to analyze a hitherto unknown dynamic equilibrium of a diamino‐xyloside as a precursor of a molecular switch. John Wiley and Sons Inc. 2022-08-04 2022-10-07 /pmc/articles/PMC9804333/ /pubmed/35754398 http://dx.doi.org/10.1002/chem.202201544 Text en © 2022 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Jaeschke, Sven Ole Lindhorst, Thisbe K. Auer, Alexander Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides |
title | Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides |
title_full | Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides |
title_fullStr | Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides |
title_full_unstemmed | Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides |
title_short | Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides |
title_sort | between two chairs: combination of theory and experiment for the determination of the conformational dynamics of xylosides |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9804333/ https://www.ncbi.nlm.nih.gov/pubmed/35754398 http://dx.doi.org/10.1002/chem.202201544 |
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