Cargando…

Correlation Analysis of Gene and Radiomic Features in Colorectal Cancer Liver Metastases

Colorectal cancer liver metastasis (CRLM) was one of the cancers with high mortality. Clinically, the target point was determined by invasive detection, which increased the suffering of patients and the cost of treatment. If the target point was found through the relationship between early radiomic...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Xuehu, Li, Nie, Guo, Haifeng, Yin, Xiaoping, Zheng, Yongchang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9805395/
https://www.ncbi.nlm.nih.gov/pubmed/36593900
http://dx.doi.org/10.1155/2022/8559011
_version_ 1784862328449138688
author Wang, Xuehu
Li, Nie
Guo, Haifeng
Yin, Xiaoping
Zheng, Yongchang
author_facet Wang, Xuehu
Li, Nie
Guo, Haifeng
Yin, Xiaoping
Zheng, Yongchang
author_sort Wang, Xuehu
collection PubMed
description Colorectal cancer liver metastasis (CRLM) was one of the cancers with high mortality. Clinically, the target point was determined by invasive detection, which increased the suffering of patients and the cost of treatment. If the target point was found through the relationship between early radiomic information and genetic information, it was expected to assist doctors in diagnosing disease, formulating treatment plans, and reducing the pain and burden of patients. In this study, gene coexpression analysis and hub gene mining were first performed on the gene data; secondly, quantitative radiomic features were extracted from CT-enhanced radiomic data to obtain features highly correlated with CRLM; and finally, we analyzed the relationship between gene features and radiomic feature correlations by establishing a link between early radiomic features and gene sequencing and finding highly correlated expressions. This experiment demonstrated that radiomic features could be used to mine gene attributes. Based on the four previously identified genes (NRAS, KRAS, BRAF, and PIK3CA), we identified two novel genes, MAPK1 and STAT1, highly associated with CRLM. There were specific correlations between these 6 genes and radiomic features (shape_elongation, glcm, glszm, firstorder_10percentile, gradient, exponent_firstorder_Range, and gradient_glszm_SmallAreaLowGrayLevel). Therefore, this paper established the correlation between radiomic features and genes, and through radiomic features, we could find the genes associated with them, which was expected to achieve noninvasive prediction of liver metastasis.
format Online
Article
Text
id pubmed-9805395
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-98053952023-01-01 Correlation Analysis of Gene and Radiomic Features in Colorectal Cancer Liver Metastases Wang, Xuehu Li, Nie Guo, Haifeng Yin, Xiaoping Zheng, Yongchang Comput Math Methods Med Research Article Colorectal cancer liver metastasis (CRLM) was one of the cancers with high mortality. Clinically, the target point was determined by invasive detection, which increased the suffering of patients and the cost of treatment. If the target point was found through the relationship between early radiomic information and genetic information, it was expected to assist doctors in diagnosing disease, formulating treatment plans, and reducing the pain and burden of patients. In this study, gene coexpression analysis and hub gene mining were first performed on the gene data; secondly, quantitative radiomic features were extracted from CT-enhanced radiomic data to obtain features highly correlated with CRLM; and finally, we analyzed the relationship between gene features and radiomic feature correlations by establishing a link between early radiomic features and gene sequencing and finding highly correlated expressions. This experiment demonstrated that radiomic features could be used to mine gene attributes. Based on the four previously identified genes (NRAS, KRAS, BRAF, and PIK3CA), we identified two novel genes, MAPK1 and STAT1, highly associated with CRLM. There were specific correlations between these 6 genes and radiomic features (shape_elongation, glcm, glszm, firstorder_10percentile, gradient, exponent_firstorder_Range, and gradient_glszm_SmallAreaLowGrayLevel). Therefore, this paper established the correlation between radiomic features and genes, and through radiomic features, we could find the genes associated with them, which was expected to achieve noninvasive prediction of liver metastasis. Hindawi 2022-12-24 /pmc/articles/PMC9805395/ /pubmed/36593900 http://dx.doi.org/10.1155/2022/8559011 Text en Copyright © 2022 Xuehu Wang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wang, Xuehu
Li, Nie
Guo, Haifeng
Yin, Xiaoping
Zheng, Yongchang
Correlation Analysis of Gene and Radiomic Features in Colorectal Cancer Liver Metastases
title Correlation Analysis of Gene and Radiomic Features in Colorectal Cancer Liver Metastases
title_full Correlation Analysis of Gene and Radiomic Features in Colorectal Cancer Liver Metastases
title_fullStr Correlation Analysis of Gene and Radiomic Features in Colorectal Cancer Liver Metastases
title_full_unstemmed Correlation Analysis of Gene and Radiomic Features in Colorectal Cancer Liver Metastases
title_short Correlation Analysis of Gene and Radiomic Features in Colorectal Cancer Liver Metastases
title_sort correlation analysis of gene and radiomic features in colorectal cancer liver metastases
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9805395/
https://www.ncbi.nlm.nih.gov/pubmed/36593900
http://dx.doi.org/10.1155/2022/8559011
work_keys_str_mv AT wangxuehu correlationanalysisofgeneandradiomicfeaturesincolorectalcancerlivermetastases
AT linie correlationanalysisofgeneandradiomicfeaturesincolorectalcancerlivermetastases
AT guohaifeng correlationanalysisofgeneandradiomicfeaturesincolorectalcancerlivermetastases
AT yinxiaoping correlationanalysisofgeneandradiomicfeaturesincolorectalcancerlivermetastases
AT zhengyongchang correlationanalysisofgeneandradiomicfeaturesincolorectalcancerlivermetastases