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A Novel Defined Pyroptosis-Related Gene Signature for Predicting the Prognosis of Endometrial Cancer

Endometrial carcinoma (EC) is the second major female genital malignancy. Genetic signatures may be an improved choice to predict the prognosis of EC patients. The relationship between pyroptosis and tumours has attracted much attention in recent years. Here, we constructed a new pyroptosis-related...

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Autores principales: Liu, Shuguang, Zeng, Chao, Lv, Huaisheng, Zhang, Yan, Xiong, Hong, Tang, Hongping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9806687/
https://www.ncbi.nlm.nih.gov/pubmed/36601599
http://dx.doi.org/10.1155/2022/7570494
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author Liu, Shuguang
Zeng, Chao
Lv, Huaisheng
Zhang, Yan
Xiong, Hong
Tang, Hongping
author_facet Liu, Shuguang
Zeng, Chao
Lv, Huaisheng
Zhang, Yan
Xiong, Hong
Tang, Hongping
author_sort Liu, Shuguang
collection PubMed
description Endometrial carcinoma (EC) is the second major female genital malignancy. Genetic signatures may be an improved choice to predict the prognosis of EC patients. The relationship between pyroptosis and tumours has attracted much attention in recent years. Here, we constructed a new pyroptosis-related gene (PRG) signature for predicting the prognosis of EC. In this study, gene data and clinical information of EC patients were obtained from The Cancer Genome Atlas (TCGA). Following the identification of PRGs correlated with EC prognosis, we further investigate the bioinformatics functions of these PRGs by univariate Cox regression analysis and Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Then, we used the least absolute contraction and selection operator (LASSO) regression and multiple Cox regression analysis to construct a new PRG signature that contains seven PRGs (NFKB1, EEF2K, CTSV, MDM2, GZMB, PANX1, and PTEN) and performed the Kaplan-Meier (K-M) analysis, receiver operating characteristic curve (ROC) analysis, and principal component analysis (PCA) to evaluate the prognostic value of our novel PRG signature. Finally, we assessed the correlations between pyroptosis and immune cells/checkpoints through the CIBERSORT tool and single-sample gene set enrichment analysis (ssGSEA). The result suggested that our signature was powerful in predicting EC prognosis and may play a part in assessing response to immunotherapy in EC patients. In conclusion, our study established a novel PRG signature for EC, which can be used as an effective prognostic marker in clinical practice in the future.
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spelling pubmed-98066872023-01-03 A Novel Defined Pyroptosis-Related Gene Signature for Predicting the Prognosis of Endometrial Cancer Liu, Shuguang Zeng, Chao Lv, Huaisheng Zhang, Yan Xiong, Hong Tang, Hongping Dis Markers Research Article Endometrial carcinoma (EC) is the second major female genital malignancy. Genetic signatures may be an improved choice to predict the prognosis of EC patients. The relationship between pyroptosis and tumours has attracted much attention in recent years. Here, we constructed a new pyroptosis-related gene (PRG) signature for predicting the prognosis of EC. In this study, gene data and clinical information of EC patients were obtained from The Cancer Genome Atlas (TCGA). Following the identification of PRGs correlated with EC prognosis, we further investigate the bioinformatics functions of these PRGs by univariate Cox regression analysis and Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Then, we used the least absolute contraction and selection operator (LASSO) regression and multiple Cox regression analysis to construct a new PRG signature that contains seven PRGs (NFKB1, EEF2K, CTSV, MDM2, GZMB, PANX1, and PTEN) and performed the Kaplan-Meier (K-M) analysis, receiver operating characteristic curve (ROC) analysis, and principal component analysis (PCA) to evaluate the prognostic value of our novel PRG signature. Finally, we assessed the correlations between pyroptosis and immune cells/checkpoints through the CIBERSORT tool and single-sample gene set enrichment analysis (ssGSEA). The result suggested that our signature was powerful in predicting EC prognosis and may play a part in assessing response to immunotherapy in EC patients. In conclusion, our study established a novel PRG signature for EC, which can be used as an effective prognostic marker in clinical practice in the future. Hindawi 2022-12-16 /pmc/articles/PMC9806687/ /pubmed/36601599 http://dx.doi.org/10.1155/2022/7570494 Text en Copyright © 2022 Shuguang Liu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Liu, Shuguang
Zeng, Chao
Lv, Huaisheng
Zhang, Yan
Xiong, Hong
Tang, Hongping
A Novel Defined Pyroptosis-Related Gene Signature for Predicting the Prognosis of Endometrial Cancer
title A Novel Defined Pyroptosis-Related Gene Signature for Predicting the Prognosis of Endometrial Cancer
title_full A Novel Defined Pyroptosis-Related Gene Signature for Predicting the Prognosis of Endometrial Cancer
title_fullStr A Novel Defined Pyroptosis-Related Gene Signature for Predicting the Prognosis of Endometrial Cancer
title_full_unstemmed A Novel Defined Pyroptosis-Related Gene Signature for Predicting the Prognosis of Endometrial Cancer
title_short A Novel Defined Pyroptosis-Related Gene Signature for Predicting the Prognosis of Endometrial Cancer
title_sort novel defined pyroptosis-related gene signature for predicting the prognosis of endometrial cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9806687/
https://www.ncbi.nlm.nih.gov/pubmed/36601599
http://dx.doi.org/10.1155/2022/7570494
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