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Benchmark Ab Initio Determination of the Conformers, Proton Affinities, and Gas-Phase Basicities of Cysteine
[Image: see text] A systematic conformational mapping combined with literature data leads to 85 stable neutral cysteine conformers. The implementation of the same mapping process for the protonated counterparts reveals 21 N-(amino-), 64 O-(carbonyl-), and 37 S-(thiol-)protonated cysteine conformers....
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9806835/ https://www.ncbi.nlm.nih.gov/pubmed/36524999 http://dx.doi.org/10.1021/acs.jpca.2c07035 |
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author | Nacsa, András B. Czakó, Gábor |
author_facet | Nacsa, András B. Czakó, Gábor |
author_sort | Nacsa, András B. |
collection | PubMed |
description | [Image: see text] A systematic conformational mapping combined with literature data leads to 85 stable neutral cysteine conformers. The implementation of the same mapping process for the protonated counterparts reveals 21 N-(amino-), 64 O-(carbonyl-), and 37 S-(thiol-)protonated cysteine conformers. Their relative energies and harmonic vibrational frequencies are given at the MP2/aug-cc-pVDZ level of theory. Further benchmark ab initio computations are performed for the 10 lowest-lying neutral and protonated amino acid conformers (for each type) such as CCSD(T)-F12a/cc-pVDZ-F12 geometry optimizations (and frequency computations for cysteine) as well as auxiliary correction computations of the basis set effects up to CCSD(T)-F12b/cc-pVQZ-F12, electron correlation effects up to CCSDT(Q), core correlation effects, second-order Douglass–Kroll relativistic effects, and zero-point energy contributions. Boltzmann-averaged 0 (298.15) K proton affinity and [298.15 K gas-phase basicity] values of cysteine are predicted to be 214.96 (216.39) [208.21], 201.83 (203.55) [194.16], and 193.31 (194.74) [186.40] kcal/mol for N-, O-, and S-protonation, respectively, also considering the previously described auxiliary corrections. |
format | Online Article Text |
id | pubmed-9806835 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-98068352023-01-03 Benchmark Ab Initio Determination of the Conformers, Proton Affinities, and Gas-Phase Basicities of Cysteine Nacsa, András B. Czakó, Gábor J Phys Chem A [Image: see text] A systematic conformational mapping combined with literature data leads to 85 stable neutral cysteine conformers. The implementation of the same mapping process for the protonated counterparts reveals 21 N-(amino-), 64 O-(carbonyl-), and 37 S-(thiol-)protonated cysteine conformers. Their relative energies and harmonic vibrational frequencies are given at the MP2/aug-cc-pVDZ level of theory. Further benchmark ab initio computations are performed for the 10 lowest-lying neutral and protonated amino acid conformers (for each type) such as CCSD(T)-F12a/cc-pVDZ-F12 geometry optimizations (and frequency computations for cysteine) as well as auxiliary correction computations of the basis set effects up to CCSD(T)-F12b/cc-pVQZ-F12, electron correlation effects up to CCSDT(Q), core correlation effects, second-order Douglass–Kroll relativistic effects, and zero-point energy contributions. Boltzmann-averaged 0 (298.15) K proton affinity and [298.15 K gas-phase basicity] values of cysteine are predicted to be 214.96 (216.39) [208.21], 201.83 (203.55) [194.16], and 193.31 (194.74) [186.40] kcal/mol for N-, O-, and S-protonation, respectively, also considering the previously described auxiliary corrections. American Chemical Society 2022-12-16 2022-12-29 /pmc/articles/PMC9806835/ /pubmed/36524999 http://dx.doi.org/10.1021/acs.jpca.2c07035 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Nacsa, András B. Czakó, Gábor Benchmark Ab Initio Determination of the Conformers, Proton Affinities, and Gas-Phase Basicities of Cysteine |
title | Benchmark Ab Initio
Determination of the Conformers,
Proton Affinities, and Gas-Phase Basicities of Cysteine |
title_full | Benchmark Ab Initio
Determination of the Conformers,
Proton Affinities, and Gas-Phase Basicities of Cysteine |
title_fullStr | Benchmark Ab Initio
Determination of the Conformers,
Proton Affinities, and Gas-Phase Basicities of Cysteine |
title_full_unstemmed | Benchmark Ab Initio
Determination of the Conformers,
Proton Affinities, and Gas-Phase Basicities of Cysteine |
title_short | Benchmark Ab Initio
Determination of the Conformers,
Proton Affinities, and Gas-Phase Basicities of Cysteine |
title_sort | benchmark ab initio
determination of the conformers,
proton affinities, and gas-phase basicities of cysteine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9806835/ https://www.ncbi.nlm.nih.gov/pubmed/36524999 http://dx.doi.org/10.1021/acs.jpca.2c07035 |
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