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Scaling of agent-based models to evaluate transmission risks of infectious diseases
The scaling behaviour of agent-based computational models, to evaluate transmission risks of infectious diseases, is addressed. To this end we use an existing computational code, made available in the public domain by its author, to analyse the system dynamics from a general perspective. The goal be...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9807651/ https://www.ncbi.nlm.nih.gov/pubmed/36593240 http://dx.doi.org/10.1038/s41598-022-26552-w |
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author | Thomas, Peter J. Marvell, Aidan |
author_facet | Thomas, Peter J. Marvell, Aidan |
author_sort | Thomas, Peter J. |
collection | PubMed |
description | The scaling behaviour of agent-based computational models, to evaluate transmission risks of infectious diseases, is addressed. To this end we use an existing computational code, made available in the public domain by its author, to analyse the system dynamics from a general perspective. The goal being to obtain deeper insight into the system behaviour than can be obtained from considering raw data alone. The data analysis collapses the output data for infection numbers and leads to closed-form expressions for the results. It is found that two parameters are sufficient to summarize the system development and the scaling of the data. One of the parameters characterizes the overall system dynamics. It represents a scaling factor for time when expressed in iteration steps of the computational code. The other parameter identifies the instant when the system adopts its maximum infection rate. The data analysis methodology presented constitutes a means for a quantitative intercomparison of predictions for infection numbers, and infection dynamics, for data produced by different models and can enable a quantitative comparison to real-world data. |
format | Online Article Text |
id | pubmed-9807651 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-98076512023-01-04 Scaling of agent-based models to evaluate transmission risks of infectious diseases Thomas, Peter J. Marvell, Aidan Sci Rep Article The scaling behaviour of agent-based computational models, to evaluate transmission risks of infectious diseases, is addressed. To this end we use an existing computational code, made available in the public domain by its author, to analyse the system dynamics from a general perspective. The goal being to obtain deeper insight into the system behaviour than can be obtained from considering raw data alone. The data analysis collapses the output data for infection numbers and leads to closed-form expressions for the results. It is found that two parameters are sufficient to summarize the system development and the scaling of the data. One of the parameters characterizes the overall system dynamics. It represents a scaling factor for time when expressed in iteration steps of the computational code. The other parameter identifies the instant when the system adopts its maximum infection rate. The data analysis methodology presented constitutes a means for a quantitative intercomparison of predictions for infection numbers, and infection dynamics, for data produced by different models and can enable a quantitative comparison to real-world data. Nature Publishing Group UK 2023-01-02 /pmc/articles/PMC9807651/ /pubmed/36593240 http://dx.doi.org/10.1038/s41598-022-26552-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Thomas, Peter J. Marvell, Aidan Scaling of agent-based models to evaluate transmission risks of infectious diseases |
title | Scaling of agent-based models to evaluate transmission risks of infectious diseases |
title_full | Scaling of agent-based models to evaluate transmission risks of infectious diseases |
title_fullStr | Scaling of agent-based models to evaluate transmission risks of infectious diseases |
title_full_unstemmed | Scaling of agent-based models to evaluate transmission risks of infectious diseases |
title_short | Scaling of agent-based models to evaluate transmission risks of infectious diseases |
title_sort | scaling of agent-based models to evaluate transmission risks of infectious diseases |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9807651/ https://www.ncbi.nlm.nih.gov/pubmed/36593240 http://dx.doi.org/10.1038/s41598-022-26552-w |
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