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Distinct tumor microenvironment landscapes in gastric cancer classified by cuproptosis-related lncRNAs

Cuproptosis is a newly discovered non-apoptotic form of cell death that may be related to the development of tumors. Nonetheless, the potential role of cuproptosis-related lncRNAs in tumor microenvironment (TME) formation and patient-tailored treatment optimization of gastric cancer (GC) is still un...

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Autores principales: Huang, Jianfeng, Chen, Meixiang, Pei, Wenguang, Xu, Zhijue, Ning, Jie, Chen, Changyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9809317/
https://www.ncbi.nlm.nih.gov/pubmed/36606199
http://dx.doi.org/10.7150/jca.79640
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author Huang, Jianfeng
Chen, Meixiang
Pei, Wenguang
Xu, Zhijue
Ning, Jie
Chen, Changyu
author_facet Huang, Jianfeng
Chen, Meixiang
Pei, Wenguang
Xu, Zhijue
Ning, Jie
Chen, Changyu
author_sort Huang, Jianfeng
collection PubMed
description Cuproptosis is a newly discovered non-apoptotic form of cell death that may be related to the development of tumors. Nonetheless, the potential role of cuproptosis-related lncRNAs in tumor microenvironment (TME) formation and patient-tailored treatment optimization of gastric cancer (GC) is still unclear. In this study, the six-lncRNA signature was constructed to quantify the molecular patterns of GC using LASSO-Cox regression model. Receiver operating characteristic (ROC) curves, C-index curves, independent prognostic analysis and principal component analysis (PCA) were conducted to verify and evaluate the model. The results showed that this risk model was accurate and reliable in predicting GC patient survival. In addition, two distinct subgroups were identified based on the risk model, which showed significant difference in biological functions of the associated genes, TME scores, characteristics of infiltrating immune cells and immunotherapy responses. We found that the high-risk subgroup was associated with immune activation and tumor-related pathways. Furthermore, compared with the low-risk subgroup, the high-risk subgroup had higher TME scores, richer immune cell infiltration and a better immunotherapy response. To accurately identify immune cold tumors and hot tumors, all samples of GC were divided into four distinct clusters by consensus clustering. Among them, Cluster 3 was identified as an immune hot tumor and was more sensitive to immunotherapy. Overall, this study demonstrates that cuproptosis-related lncRNAs could accurately predict the prognosis of patients with GC, help make a distinction between immune cold tumors and hot tumors and provide a basis for the precision medicine of GC.
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spelling pubmed-98093172023-01-04 Distinct tumor microenvironment landscapes in gastric cancer classified by cuproptosis-related lncRNAs Huang, Jianfeng Chen, Meixiang Pei, Wenguang Xu, Zhijue Ning, Jie Chen, Changyu J Cancer Research Paper Cuproptosis is a newly discovered non-apoptotic form of cell death that may be related to the development of tumors. Nonetheless, the potential role of cuproptosis-related lncRNAs in tumor microenvironment (TME) formation and patient-tailored treatment optimization of gastric cancer (GC) is still unclear. In this study, the six-lncRNA signature was constructed to quantify the molecular patterns of GC using LASSO-Cox regression model. Receiver operating characteristic (ROC) curves, C-index curves, independent prognostic analysis and principal component analysis (PCA) were conducted to verify and evaluate the model. The results showed that this risk model was accurate and reliable in predicting GC patient survival. In addition, two distinct subgroups were identified based on the risk model, which showed significant difference in biological functions of the associated genes, TME scores, characteristics of infiltrating immune cells and immunotherapy responses. We found that the high-risk subgroup was associated with immune activation and tumor-related pathways. Furthermore, compared with the low-risk subgroup, the high-risk subgroup had higher TME scores, richer immune cell infiltration and a better immunotherapy response. To accurately identify immune cold tumors and hot tumors, all samples of GC were divided into four distinct clusters by consensus clustering. Among them, Cluster 3 was identified as an immune hot tumor and was more sensitive to immunotherapy. Overall, this study demonstrates that cuproptosis-related lncRNAs could accurately predict the prognosis of patients with GC, help make a distinction between immune cold tumors and hot tumors and provide a basis for the precision medicine of GC. Ivyspring International Publisher 2022-12-07 /pmc/articles/PMC9809317/ /pubmed/36606199 http://dx.doi.org/10.7150/jca.79640 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Huang, Jianfeng
Chen, Meixiang
Pei, Wenguang
Xu, Zhijue
Ning, Jie
Chen, Changyu
Distinct tumor microenvironment landscapes in gastric cancer classified by cuproptosis-related lncRNAs
title Distinct tumor microenvironment landscapes in gastric cancer classified by cuproptosis-related lncRNAs
title_full Distinct tumor microenvironment landscapes in gastric cancer classified by cuproptosis-related lncRNAs
title_fullStr Distinct tumor microenvironment landscapes in gastric cancer classified by cuproptosis-related lncRNAs
title_full_unstemmed Distinct tumor microenvironment landscapes in gastric cancer classified by cuproptosis-related lncRNAs
title_short Distinct tumor microenvironment landscapes in gastric cancer classified by cuproptosis-related lncRNAs
title_sort distinct tumor microenvironment landscapes in gastric cancer classified by cuproptosis-related lncrnas
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9809317/
https://www.ncbi.nlm.nih.gov/pubmed/36606199
http://dx.doi.org/10.7150/jca.79640
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