Cargando…
Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae)
Plantago asiatica L. is a representative individual species of Plantaginaceae, whose high reputation is owed to its edible and medicinal values. However, the phylogeny and genes of the P. asiatica chloroplast have not yet been well described. Here we report the findings of a comprehensive analysis o...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9809945/ https://www.ncbi.nlm.nih.gov/pubmed/36592637 http://dx.doi.org/10.1080/15592324.2022.2163345 |
_version_ | 1784863229114056704 |
---|---|
author | Wu, Jing Zhang, Jing Guo, Xiaohu Yu, Nianjun Peng, Daiyin Xing, Shihai |
author_facet | Wu, Jing Zhang, Jing Guo, Xiaohu Yu, Nianjun Peng, Daiyin Xing, Shihai |
author_sort | Wu, Jing |
collection | PubMed |
description | Plantago asiatica L. is a representative individual species of Plantaginaceae, whose high reputation is owed to its edible and medicinal values. However, the phylogeny and genes of the P. asiatica chloroplast have not yet been well described. Here we report the findings of a comprehensive analysis of the P. asiatica chloroplast genome. The P. asiatica chloroplast genome is 164,992 bp, circular, and has a GC content of 37.98%. The circular genome contains 141 genes, including 8 rRNAs, 38 tRNAs, and 95 protein-coding genes. Seventy-two simple sequence repeats are detected. Comparative chloroplast genome analysis of six related species suggests that a higher similarity exists in the coding region than the non-coding region, and differences in the degree of preservation is smaller between P. asiatica and Plantago depressa than among others. Our phylogenetic analysis illustrates P. asiatica has a relatively close relationship with P. depressa, which was also divided into different clades with Plantago ovata and Plantago lagopus in the genus Plantago. This analysis of the P. asiatica chloroplast genome contributes to an improved deeply understanding of the evolutionary relationships among Plantaginaceae. |
format | Online Article Text |
id | pubmed-9809945 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-98099452023-01-04 Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae) Wu, Jing Zhang, Jing Guo, Xiaohu Yu, Nianjun Peng, Daiyin Xing, Shihai Plant Signal Behav Research Paper Plantago asiatica L. is a representative individual species of Plantaginaceae, whose high reputation is owed to its edible and medicinal values. However, the phylogeny and genes of the P. asiatica chloroplast have not yet been well described. Here we report the findings of a comprehensive analysis of the P. asiatica chloroplast genome. The P. asiatica chloroplast genome is 164,992 bp, circular, and has a GC content of 37.98%. The circular genome contains 141 genes, including 8 rRNAs, 38 tRNAs, and 95 protein-coding genes. Seventy-two simple sequence repeats are detected. Comparative chloroplast genome analysis of six related species suggests that a higher similarity exists in the coding region than the non-coding region, and differences in the degree of preservation is smaller between P. asiatica and Plantago depressa than among others. Our phylogenetic analysis illustrates P. asiatica has a relatively close relationship with P. depressa, which was also divided into different clades with Plantago ovata and Plantago lagopus in the genus Plantago. This analysis of the P. asiatica chloroplast genome contributes to an improved deeply understanding of the evolutionary relationships among Plantaginaceae. Taylor & Francis 2023-01-02 /pmc/articles/PMC9809945/ /pubmed/36592637 http://dx.doi.org/10.1080/15592324.2022.2163345 Text en © 2023 The Author(s). Published with license by Taylor & Francis Group, LLC. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Paper Wu, Jing Zhang, Jing Guo, Xiaohu Yu, Nianjun Peng, Daiyin Xing, Shihai Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae) |
title | Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae) |
title_full | Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae) |
title_fullStr | Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae) |
title_full_unstemmed | Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae) |
title_short | Comprehensive analysis of complete chloroplast genome sequence of Plantago asiatica L. (Plantaginaceae) |
title_sort | comprehensive analysis of complete chloroplast genome sequence of plantago asiatica l. (plantaginaceae) |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9809945/ https://www.ncbi.nlm.nih.gov/pubmed/36592637 http://dx.doi.org/10.1080/15592324.2022.2163345 |
work_keys_str_mv | AT wujing comprehensiveanalysisofcompletechloroplastgenomesequenceofplantagoasiaticalplantaginaceae AT zhangjing comprehensiveanalysisofcompletechloroplastgenomesequenceofplantagoasiaticalplantaginaceae AT guoxiaohu comprehensiveanalysisofcompletechloroplastgenomesequenceofplantagoasiaticalplantaginaceae AT yunianjun comprehensiveanalysisofcompletechloroplastgenomesequenceofplantagoasiaticalplantaginaceae AT pengdaiyin comprehensiveanalysisofcompletechloroplastgenomesequenceofplantagoasiaticalplantaginaceae AT xingshihai comprehensiveanalysisofcompletechloroplastgenomesequenceofplantagoasiaticalplantaginaceae |