Cargando…

rxCOV is a quantitative metric for assessing immunoassay analyte fidelity

Immunoassay based bioanalytical measurements are widely used in a variety of biomedical research and clinical settings. In these settings they are assumed to faithfully represent the experimental conditions being tested and the sample groups being compared. Although significant technical advances ha...

Descripción completa

Detalles Bibliográficos
Autores principales: Brand, Rhonda M., Pitlor, Danielle, Metter, E. Jeffrey, Dudley, Beth, Karloski, Eve, Zyhowski, Ashley, Brand, Randall E., Uttam, Shikhar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9810650/
https://www.ncbi.nlm.nih.gov/pubmed/36596931
http://dx.doi.org/10.1038/s41598-022-27309-1
_version_ 1784863353463635968
author Brand, Rhonda M.
Pitlor, Danielle
Metter, E. Jeffrey
Dudley, Beth
Karloski, Eve
Zyhowski, Ashley
Brand, Randall E.
Uttam, Shikhar
author_facet Brand, Rhonda M.
Pitlor, Danielle
Metter, E. Jeffrey
Dudley, Beth
Karloski, Eve
Zyhowski, Ashley
Brand, Randall E.
Uttam, Shikhar
author_sort Brand, Rhonda M.
collection PubMed
description Immunoassay based bioanalytical measurements are widely used in a variety of biomedical research and clinical settings. In these settings they are assumed to faithfully represent the experimental conditions being tested and the sample groups being compared. Although significant technical advances have been made in improving sensitivity and quality of the measurements, currently no metrics exist that objectively quantify the fidelity of the measured analytes with respect to noise associated with the specific assay. Here we introduce ratio of cross-coefficient-of-variation (rxCOV), a fidelity metric for objectively assessing immunoassay analyte measurement quality when comparing its differential expression between different sample groups or experimental conditions. We derive the metric from first principles and establish its feasibility and applicability using simulated and experimental data. We show that rxCOV assesses fidelity independent of statistical significance, and importantly, identifies when latter is meaningful. We also discuss its importance in the context of averaging experimental replicates for increasing signal to noise ratio. Finally, we demonstrate its application in a Lynch Syndrome case study. We conclude by discussing its applicability to multiplexed immunoassays, other biosensing assays, and to paired and unpaired data. We anticipate rxCOV to be adopted as a simple and easy-to-use fidelity metric for performing robust and reproducible biomedical research.
format Online
Article
Text
id pubmed-9810650
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-98106502023-01-05 rxCOV is a quantitative metric for assessing immunoassay analyte fidelity Brand, Rhonda M. Pitlor, Danielle Metter, E. Jeffrey Dudley, Beth Karloski, Eve Zyhowski, Ashley Brand, Randall E. Uttam, Shikhar Sci Rep Article Immunoassay based bioanalytical measurements are widely used in a variety of biomedical research and clinical settings. In these settings they are assumed to faithfully represent the experimental conditions being tested and the sample groups being compared. Although significant technical advances have been made in improving sensitivity and quality of the measurements, currently no metrics exist that objectively quantify the fidelity of the measured analytes with respect to noise associated with the specific assay. Here we introduce ratio of cross-coefficient-of-variation (rxCOV), a fidelity metric for objectively assessing immunoassay analyte measurement quality when comparing its differential expression between different sample groups or experimental conditions. We derive the metric from first principles and establish its feasibility and applicability using simulated and experimental data. We show that rxCOV assesses fidelity independent of statistical significance, and importantly, identifies when latter is meaningful. We also discuss its importance in the context of averaging experimental replicates for increasing signal to noise ratio. Finally, we demonstrate its application in a Lynch Syndrome case study. We conclude by discussing its applicability to multiplexed immunoassays, other biosensing assays, and to paired and unpaired data. We anticipate rxCOV to be adopted as a simple and easy-to-use fidelity metric for performing robust and reproducible biomedical research. Nature Publishing Group UK 2023-01-03 /pmc/articles/PMC9810650/ /pubmed/36596931 http://dx.doi.org/10.1038/s41598-022-27309-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Brand, Rhonda M.
Pitlor, Danielle
Metter, E. Jeffrey
Dudley, Beth
Karloski, Eve
Zyhowski, Ashley
Brand, Randall E.
Uttam, Shikhar
rxCOV is a quantitative metric for assessing immunoassay analyte fidelity
title rxCOV is a quantitative metric for assessing immunoassay analyte fidelity
title_full rxCOV is a quantitative metric for assessing immunoassay analyte fidelity
title_fullStr rxCOV is a quantitative metric for assessing immunoassay analyte fidelity
title_full_unstemmed rxCOV is a quantitative metric for assessing immunoassay analyte fidelity
title_short rxCOV is a quantitative metric for assessing immunoassay analyte fidelity
title_sort rxcov is a quantitative metric for assessing immunoassay analyte fidelity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9810650/
https://www.ncbi.nlm.nih.gov/pubmed/36596931
http://dx.doi.org/10.1038/s41598-022-27309-1
work_keys_str_mv AT brandrhondam rxcovisaquantitativemetricforassessingimmunoassayanalytefidelity
AT pitlordanielle rxcovisaquantitativemetricforassessingimmunoassayanalytefidelity
AT metterejeffrey rxcovisaquantitativemetricforassessingimmunoassayanalytefidelity
AT dudleybeth rxcovisaquantitativemetricforassessingimmunoassayanalytefidelity
AT karloskieve rxcovisaquantitativemetricforassessingimmunoassayanalytefidelity
AT zyhowskiashley rxcovisaquantitativemetricforassessingimmunoassayanalytefidelity
AT brandrandalle rxcovisaquantitativemetricforassessingimmunoassayanalytefidelity
AT uttamshikhar rxcovisaquantitativemetricforassessingimmunoassayanalytefidelity