Cargando…

Prognostic biomarkers correlated with immune infiltration in non‐small cell lung cancer

Lung cancer is the leading cause of cancer‐related mortality in men and women globally. Non‐small cell lung cancer (NSCLC) is the most prevalent subtype, accounting for 85–90% of all cancers. Although there have been dramatic advances in therapeutic approaches in recent decades, the recurrence and m...

Descripción completa

Detalles Bibliográficos
Autores principales: Xu, Fei, Cui, Wen‐qiang, Liu, Cun, Feng, Fubin, Liu, Ruijuan, Zhang, Jingtao, Sun, Chang‐gang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9811604/
https://www.ncbi.nlm.nih.gov/pubmed/36282125
http://dx.doi.org/10.1002/2211-5463.13501
_version_ 1784863563172544512
author Xu, Fei
Cui, Wen‐qiang
Liu, Cun
Feng, Fubin
Liu, Ruijuan
Zhang, Jingtao
Sun, Chang‐gang
author_facet Xu, Fei
Cui, Wen‐qiang
Liu, Cun
Feng, Fubin
Liu, Ruijuan
Zhang, Jingtao
Sun, Chang‐gang
author_sort Xu, Fei
collection PubMed
description Lung cancer is the leading cause of cancer‐related mortality in men and women globally. Non‐small cell lung cancer (NSCLC) is the most prevalent subtype, accounting for 85–90% of all cancers. Although there have been dramatic advances in therapeutic approaches in recent decades, the recurrence and metastasis rates of NSCLC are as high as 30–40% with the 5‐year overall survival rate being less than 15%. Therefore, it is necessary to explore the pathogenesis of NSCLC at the genetic level and identify prognostic biomarkers and novel therapeutic targets. Here, we aimed to identify mutated genes with high frequencies in Chinese NSCLC patients using next‐generation sequencing and to investigate their relationships with the tumor mutation burden (TMB) and tumor immune microenvironment. A total of 110 NSCLC patients were enrolled to profile the genetic variations. Mutations in EGFR (62.37%), TP53 (61.29%), LRP1B (13.98%), FAT1 (12.90%), KMT2D (11.83%), CREBBP (10.75%), and RB1 (9.68%) were most prevalent. TP53, LRP1B, KMT2D, and CREBBP mutations were all significantly associated with high TMB (P < 0.05 or P < 0.01). The infiltrating levels of immune cells and immune molecules were enriched significantly in the LRP1B mutation group. LRP1B mutations significantly correlated with stimulating and inhibitory immunoregulators. Gene set enrichment analysis revealed that cell cycle, the Notch signaling pathway, the insulin signaling pathway, and the mTOR signaling pathway are related to LRP1B mutations in the immune system. LRP1B mutations may be of clinical importance in enhancing the anti‐tumor immune response and may be a promising biomarker for predicting immunotherapy responsiveness.
format Online
Article
Text
id pubmed-9811604
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-98116042023-01-05 Prognostic biomarkers correlated with immune infiltration in non‐small cell lung cancer Xu, Fei Cui, Wen‐qiang Liu, Cun Feng, Fubin Liu, Ruijuan Zhang, Jingtao Sun, Chang‐gang FEBS Open Bio Research Articles Lung cancer is the leading cause of cancer‐related mortality in men and women globally. Non‐small cell lung cancer (NSCLC) is the most prevalent subtype, accounting for 85–90% of all cancers. Although there have been dramatic advances in therapeutic approaches in recent decades, the recurrence and metastasis rates of NSCLC are as high as 30–40% with the 5‐year overall survival rate being less than 15%. Therefore, it is necessary to explore the pathogenesis of NSCLC at the genetic level and identify prognostic biomarkers and novel therapeutic targets. Here, we aimed to identify mutated genes with high frequencies in Chinese NSCLC patients using next‐generation sequencing and to investigate their relationships with the tumor mutation burden (TMB) and tumor immune microenvironment. A total of 110 NSCLC patients were enrolled to profile the genetic variations. Mutations in EGFR (62.37%), TP53 (61.29%), LRP1B (13.98%), FAT1 (12.90%), KMT2D (11.83%), CREBBP (10.75%), and RB1 (9.68%) were most prevalent. TP53, LRP1B, KMT2D, and CREBBP mutations were all significantly associated with high TMB (P < 0.05 or P < 0.01). The infiltrating levels of immune cells and immune molecules were enriched significantly in the LRP1B mutation group. LRP1B mutations significantly correlated with stimulating and inhibitory immunoregulators. Gene set enrichment analysis revealed that cell cycle, the Notch signaling pathway, the insulin signaling pathway, and the mTOR signaling pathway are related to LRP1B mutations in the immune system. LRP1B mutations may be of clinical importance in enhancing the anti‐tumor immune response and may be a promising biomarker for predicting immunotherapy responsiveness. John Wiley and Sons Inc. 2022-11-28 /pmc/articles/PMC9811604/ /pubmed/36282125 http://dx.doi.org/10.1002/2211-5463.13501 Text en © 2022 The Authors. FEBS Open Bio published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Xu, Fei
Cui, Wen‐qiang
Liu, Cun
Feng, Fubin
Liu, Ruijuan
Zhang, Jingtao
Sun, Chang‐gang
Prognostic biomarkers correlated with immune infiltration in non‐small cell lung cancer
title Prognostic biomarkers correlated with immune infiltration in non‐small cell lung cancer
title_full Prognostic biomarkers correlated with immune infiltration in non‐small cell lung cancer
title_fullStr Prognostic biomarkers correlated with immune infiltration in non‐small cell lung cancer
title_full_unstemmed Prognostic biomarkers correlated with immune infiltration in non‐small cell lung cancer
title_short Prognostic biomarkers correlated with immune infiltration in non‐small cell lung cancer
title_sort prognostic biomarkers correlated with immune infiltration in non‐small cell lung cancer
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9811604/
https://www.ncbi.nlm.nih.gov/pubmed/36282125
http://dx.doi.org/10.1002/2211-5463.13501
work_keys_str_mv AT xufei prognosticbiomarkerscorrelatedwithimmuneinfiltrationinnonsmallcelllungcancer
AT cuiwenqiang prognosticbiomarkerscorrelatedwithimmuneinfiltrationinnonsmallcelllungcancer
AT liucun prognosticbiomarkerscorrelatedwithimmuneinfiltrationinnonsmallcelllungcancer
AT fengfubin prognosticbiomarkerscorrelatedwithimmuneinfiltrationinnonsmallcelllungcancer
AT liuruijuan prognosticbiomarkerscorrelatedwithimmuneinfiltrationinnonsmallcelllungcancer
AT zhangjingtao prognosticbiomarkerscorrelatedwithimmuneinfiltrationinnonsmallcelllungcancer
AT sunchanggang prognosticbiomarkerscorrelatedwithimmuneinfiltrationinnonsmallcelllungcancer