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The genome‐wide DNA methylation profiles among neurosurgery patients with and without post‐operative delirium
AIMS: There is no previous study demonstrating the differences of genome‐wide DNA methylation (DNAm) profiles between patients with and without postoperative delirium (POD). We aimed to discover epigenetic (DNAm) markers that are associated with POD in blood obtained from patients before and after n...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons Australia, Ltd
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9812874/ https://www.ncbi.nlm.nih.gov/pubmed/36266784 http://dx.doi.org/10.1111/pcn.13495 |
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author | Yamanashi, Takehiko Crutchley, Kaitlyn J. Wahba, Nadia E. Nagao, Takaaki Marra, Pedro S. Akers, Cade C. Sullivan, Eleanor J. Iwata, Masaaki Howard, Mathew A Cho, Hyunkeun R. Kawasaki, Hiroto Hughes, Christopher G. Pandharipande, Pratik P. Hefti, Marco M. Shinozaki, Gen |
author_facet | Yamanashi, Takehiko Crutchley, Kaitlyn J. Wahba, Nadia E. Nagao, Takaaki Marra, Pedro S. Akers, Cade C. Sullivan, Eleanor J. Iwata, Masaaki Howard, Mathew A Cho, Hyunkeun R. Kawasaki, Hiroto Hughes, Christopher G. Pandharipande, Pratik P. Hefti, Marco M. Shinozaki, Gen |
author_sort | Yamanashi, Takehiko |
collection | PubMed |
description | AIMS: There is no previous study demonstrating the differences of genome‐wide DNA methylation (DNAm) profiles between patients with and without postoperative delirium (POD). We aimed to discover epigenetic (DNAm) markers that are associated with POD in blood obtained from patients before and after neurosurgery. METHODS: Pre‐ and post‐surgical blood DNA samples from 37 patients, including 10 POD cases, were analyzed using the Illumina EPIC array genome‐wide platform. We examined DNAm differences in blood from patients with and without POD. Enrichment analysis with Gene Ontology and Kyoto Encyclopedia of Genes and Genomes terms were also conducted. RESULTS: When POD cases were tested for DNAm change before and after surgery, enrichment analyses showed many relevant signals with statistical significance in immune response related‐pathways and inflammatory cytokine related‐pathways such as “cellular response to cytokine stimulus”, “regulation of immune system process”, “regulation of cell activation”, and “regulation of cytokine production”. Furthermore, after excluding the potential effect of common factors related to surgery and anesthesia between POD cases and non‐POD controls, the enrichment analyses showed significant signals such as “immune response” and “T cell activation”, which are same pathways previously identified from an independent non‐surgical inpatient cohort. CONCLUSIONS: Our first genome‐wide DNAm investigation of POD showed promising signals related to immune response, inflammatory response and other relevant signals considered to be associated with delirium pathophysiology. Our data supports the hypothesis that epigenetics play an important role in the pathophysiological mechanism of delirium and suggest the potential usefulness of an epigenetics‐based biomarker of POD. |
format | Online Article Text |
id | pubmed-9812874 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley & Sons Australia, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-98128742023-04-14 The genome‐wide DNA methylation profiles among neurosurgery patients with and without post‐operative delirium Yamanashi, Takehiko Crutchley, Kaitlyn J. Wahba, Nadia E. Nagao, Takaaki Marra, Pedro S. Akers, Cade C. Sullivan, Eleanor J. Iwata, Masaaki Howard, Mathew A Cho, Hyunkeun R. Kawasaki, Hiroto Hughes, Christopher G. Pandharipande, Pratik P. Hefti, Marco M. Shinozaki, Gen Psychiatry Clin Neurosci Regular Articles AIMS: There is no previous study demonstrating the differences of genome‐wide DNA methylation (DNAm) profiles between patients with and without postoperative delirium (POD). We aimed to discover epigenetic (DNAm) markers that are associated with POD in blood obtained from patients before and after neurosurgery. METHODS: Pre‐ and post‐surgical blood DNA samples from 37 patients, including 10 POD cases, were analyzed using the Illumina EPIC array genome‐wide platform. We examined DNAm differences in blood from patients with and without POD. Enrichment analysis with Gene Ontology and Kyoto Encyclopedia of Genes and Genomes terms were also conducted. RESULTS: When POD cases were tested for DNAm change before and after surgery, enrichment analyses showed many relevant signals with statistical significance in immune response related‐pathways and inflammatory cytokine related‐pathways such as “cellular response to cytokine stimulus”, “regulation of immune system process”, “regulation of cell activation”, and “regulation of cytokine production”. Furthermore, after excluding the potential effect of common factors related to surgery and anesthesia between POD cases and non‐POD controls, the enrichment analyses showed significant signals such as “immune response” and “T cell activation”, which are same pathways previously identified from an independent non‐surgical inpatient cohort. CONCLUSIONS: Our first genome‐wide DNAm investigation of POD showed promising signals related to immune response, inflammatory response and other relevant signals considered to be associated with delirium pathophysiology. Our data supports the hypothesis that epigenetics play an important role in the pathophysiological mechanism of delirium and suggest the potential usefulness of an epigenetics‐based biomarker of POD. John Wiley & Sons Australia, Ltd 2022-11-17 2023-01 /pmc/articles/PMC9812874/ /pubmed/36266784 http://dx.doi.org/10.1111/pcn.13495 Text en © 2022 The Authors. Psychiatry and Clinical Neurosciences published by John Wiley & Sons Australia, Ltd on behalf of Japanese Society of Psychiatry and Neurology. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Regular Articles Yamanashi, Takehiko Crutchley, Kaitlyn J. Wahba, Nadia E. Nagao, Takaaki Marra, Pedro S. Akers, Cade C. Sullivan, Eleanor J. Iwata, Masaaki Howard, Mathew A Cho, Hyunkeun R. Kawasaki, Hiroto Hughes, Christopher G. Pandharipande, Pratik P. Hefti, Marco M. Shinozaki, Gen The genome‐wide DNA methylation profiles among neurosurgery patients with and without post‐operative delirium |
title | The genome‐wide DNA methylation profiles among neurosurgery patients with and without post‐operative delirium |
title_full | The genome‐wide DNA methylation profiles among neurosurgery patients with and without post‐operative delirium |
title_fullStr | The genome‐wide DNA methylation profiles among neurosurgery patients with and without post‐operative delirium |
title_full_unstemmed | The genome‐wide DNA methylation profiles among neurosurgery patients with and without post‐operative delirium |
title_short | The genome‐wide DNA methylation profiles among neurosurgery patients with and without post‐operative delirium |
title_sort | genome‐wide dna methylation profiles among neurosurgery patients with and without post‐operative delirium |
topic | Regular Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9812874/ https://www.ncbi.nlm.nih.gov/pubmed/36266784 http://dx.doi.org/10.1111/pcn.13495 |
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