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Ultrafast dynamics of heme distortion in the O(2)-sensor of a thermophilic anaerobe bacterium

Heme-Nitric oxide and Oxygen binding protein domains (H-NOX) are found in signaling pathways of both prokaryotes and eukaryotes and share sequence homology with soluble guanylate cyclase, the mammalian NO receptor. In bacteria, H-NOX is associated with kinase or methyl accepting chemotaxis domains....

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Autores principales: Petrova, Olga N., Yoo, Byung-Kuk, Lamarre, Isabelle, Selles, Julien, Nioche, Pierre, Negrerie, Michel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9814294/
https://www.ncbi.nlm.nih.gov/pubmed/36697566
http://dx.doi.org/10.1038/s42004-021-00471-9
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author Petrova, Olga N.
Yoo, Byung-Kuk
Lamarre, Isabelle
Selles, Julien
Nioche, Pierre
Negrerie, Michel
author_facet Petrova, Olga N.
Yoo, Byung-Kuk
Lamarre, Isabelle
Selles, Julien
Nioche, Pierre
Negrerie, Michel
author_sort Petrova, Olga N.
collection PubMed
description Heme-Nitric oxide and Oxygen binding protein domains (H-NOX) are found in signaling pathways of both prokaryotes and eukaryotes and share sequence homology with soluble guanylate cyclase, the mammalian NO receptor. In bacteria, H-NOX is associated with kinase or methyl accepting chemotaxis domains. In the O(2)-sensor of the strict anaerobe Caldanaerobacter tengcongensis (Ct H-NOX) the heme appears highly distorted after O(2) binding, but the role of heme distortion in allosteric transitions was not yet evidenced. Here, we measure the dynamics of the heme distortion triggered by the dissociation of diatomics from Ct H-NOX using transient electronic absorption spectroscopy in the picosecond to millisecond time range. We obtained a spectroscopic signature of the heme flattening upon O(2) dissociation. The heme distortion is immediately (<1 ps) released after O(2) dissociation to produce a relaxed state. This heme conformational change occurs with different proportions depending on diatomics as follows: CO < NO < O(2). Our time-resolved data demonstrate that the primary structural event of allostery is the heme distortion in the Ct H-NOX sensor, contrastingly with hemoglobin and the human NO receptor, in which the primary structural events are respectively the motion of the proximal histidine and the rupture of the iron-histidine bond.
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spelling pubmed-98142942023-01-10 Ultrafast dynamics of heme distortion in the O(2)-sensor of a thermophilic anaerobe bacterium Petrova, Olga N. Yoo, Byung-Kuk Lamarre, Isabelle Selles, Julien Nioche, Pierre Negrerie, Michel Commun Chem Article Heme-Nitric oxide and Oxygen binding protein domains (H-NOX) are found in signaling pathways of both prokaryotes and eukaryotes and share sequence homology with soluble guanylate cyclase, the mammalian NO receptor. In bacteria, H-NOX is associated with kinase or methyl accepting chemotaxis domains. In the O(2)-sensor of the strict anaerobe Caldanaerobacter tengcongensis (Ct H-NOX) the heme appears highly distorted after O(2) binding, but the role of heme distortion in allosteric transitions was not yet evidenced. Here, we measure the dynamics of the heme distortion triggered by the dissociation of diatomics from Ct H-NOX using transient electronic absorption spectroscopy in the picosecond to millisecond time range. We obtained a spectroscopic signature of the heme flattening upon O(2) dissociation. The heme distortion is immediately (<1 ps) released after O(2) dissociation to produce a relaxed state. This heme conformational change occurs with different proportions depending on diatomics as follows: CO < NO < O(2). Our time-resolved data demonstrate that the primary structural event of allostery is the heme distortion in the Ct H-NOX sensor, contrastingly with hemoglobin and the human NO receptor, in which the primary structural events are respectively the motion of the proximal histidine and the rupture of the iron-histidine bond. Nature Publishing Group UK 2021-03-05 /pmc/articles/PMC9814294/ /pubmed/36697566 http://dx.doi.org/10.1038/s42004-021-00471-9 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Petrova, Olga N.
Yoo, Byung-Kuk
Lamarre, Isabelle
Selles, Julien
Nioche, Pierre
Negrerie, Michel
Ultrafast dynamics of heme distortion in the O(2)-sensor of a thermophilic anaerobe bacterium
title Ultrafast dynamics of heme distortion in the O(2)-sensor of a thermophilic anaerobe bacterium
title_full Ultrafast dynamics of heme distortion in the O(2)-sensor of a thermophilic anaerobe bacterium
title_fullStr Ultrafast dynamics of heme distortion in the O(2)-sensor of a thermophilic anaerobe bacterium
title_full_unstemmed Ultrafast dynamics of heme distortion in the O(2)-sensor of a thermophilic anaerobe bacterium
title_short Ultrafast dynamics of heme distortion in the O(2)-sensor of a thermophilic anaerobe bacterium
title_sort ultrafast dynamics of heme distortion in the o(2)-sensor of a thermophilic anaerobe bacterium
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9814294/
https://www.ncbi.nlm.nih.gov/pubmed/36697566
http://dx.doi.org/10.1038/s42004-021-00471-9
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