Cargando…
A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis
OBJECTIVE: Using network pharmacology and molecular docking, we explored the mechanism of Angelicae Pubescentis- (AP-) Herba Taxilli (HT) in the treatment of osteoarthritis (OA). METHODS: We selected Traditional Chinese Medicine Systems Pharmacology platform (TCMSP) to filtrate the practical compone...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9814887/ https://www.ncbi.nlm.nih.gov/pubmed/36619785 http://dx.doi.org/10.1155/2022/4286168 |
_version_ | 1784864238132527104 |
---|---|
author | Zhao, Jie Zhao, Fu-Chang Li, Gang |
author_facet | Zhao, Jie Zhao, Fu-Chang Li, Gang |
author_sort | Zhao, Jie |
collection | PubMed |
description | OBJECTIVE: Using network pharmacology and molecular docking, we explored the mechanism of Angelicae Pubescentis- (AP-) Herba Taxilli (HT) in the treatment of osteoarthritis (OA). METHODS: We selected Traditional Chinese Medicine Systems Pharmacology platform (TCMSP) to filtrate the practical components and targets of AP-HT. The disease targets of “osteoarthritis (OA)” were collected by GeneCards, DrugBank, TTD, OMIM, and PharmGKB databases, and the component-target interaction network was established by Cytoscape 3.9.1. Then, we set the protein-protein interaction (PPI) network by the STRING platform and visualized by Cytoscape 3.9.1. We also conducted Gene Ontology (GO) analysis and Kyoto Encyclopedia of Gene and Genome (KEGG) pathway enrichment analysis via the bioinformatics platform. Finally, we performed molecular docking using PyMOL 2.3.0 and AutoDock Vina software. RESULTS: 11 potential compounds were selected, and 1007 OA disease targets were collected. Ninety-four main targets of the AP-HT compound in the treatment of OA have been defined. PPI network demonstrated that JUN, RELA, TNF, IL6, MAPK1, TP53, AKT1, FOS, IL10, and MYC might serve as the critical targets of AP-HT for the treatment of OA. Moreover, membrane raft, membrane microdomain, cellular response to chemical stress, and cytokine receptor binding may play essential roles in the treatment of OA via GO analysis. The main functional pathways involved in these critical targets include fluid shear stress and atherosclerosis, lipid and atherosclerosis, IL-17 signaling pathway, age-range signaling pathway in diabetic composites, and TNF signaling pathway via KEGG analysis. The results of molecular docking showed that the critical ingredients of AP-HT had an excellent affinity to related nuclear genes. |
format | Online Article Text |
id | pubmed-9814887 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-98148872023-01-06 A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis Zhao, Jie Zhao, Fu-Chang Li, Gang Comput Math Methods Med Research Article OBJECTIVE: Using network pharmacology and molecular docking, we explored the mechanism of Angelicae Pubescentis- (AP-) Herba Taxilli (HT) in the treatment of osteoarthritis (OA). METHODS: We selected Traditional Chinese Medicine Systems Pharmacology platform (TCMSP) to filtrate the practical components and targets of AP-HT. The disease targets of “osteoarthritis (OA)” were collected by GeneCards, DrugBank, TTD, OMIM, and PharmGKB databases, and the component-target interaction network was established by Cytoscape 3.9.1. Then, we set the protein-protein interaction (PPI) network by the STRING platform and visualized by Cytoscape 3.9.1. We also conducted Gene Ontology (GO) analysis and Kyoto Encyclopedia of Gene and Genome (KEGG) pathway enrichment analysis via the bioinformatics platform. Finally, we performed molecular docking using PyMOL 2.3.0 and AutoDock Vina software. RESULTS: 11 potential compounds were selected, and 1007 OA disease targets were collected. Ninety-four main targets of the AP-HT compound in the treatment of OA have been defined. PPI network demonstrated that JUN, RELA, TNF, IL6, MAPK1, TP53, AKT1, FOS, IL10, and MYC might serve as the critical targets of AP-HT for the treatment of OA. Moreover, membrane raft, membrane microdomain, cellular response to chemical stress, and cytokine receptor binding may play essential roles in the treatment of OA via GO analysis. The main functional pathways involved in these critical targets include fluid shear stress and atherosclerosis, lipid and atherosclerosis, IL-17 signaling pathway, age-range signaling pathway in diabetic composites, and TNF signaling pathway via KEGG analysis. The results of molecular docking showed that the critical ingredients of AP-HT had an excellent affinity to related nuclear genes. Hindawi 2022-12-28 /pmc/articles/PMC9814887/ /pubmed/36619785 http://dx.doi.org/10.1155/2022/4286168 Text en Copyright © 2022 Jie Zhao et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zhao, Jie Zhao, Fu-Chang Li, Gang A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis |
title | A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis |
title_full | A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis |
title_fullStr | A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis |
title_full_unstemmed | A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis |
title_short | A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis |
title_sort | network pharmacology-based study of potential targets of angelicae pubescentis-herba taxilli compound for the treatment of osteoarthritis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9814887/ https://www.ncbi.nlm.nih.gov/pubmed/36619785 http://dx.doi.org/10.1155/2022/4286168 |
work_keys_str_mv | AT zhaojie anetworkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis AT zhaofuchang anetworkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis AT ligang anetworkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis AT zhaojie networkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis AT zhaofuchang networkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis AT ligang networkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis |