Cargando…

A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis

OBJECTIVE: Using network pharmacology and molecular docking, we explored the mechanism of Angelicae Pubescentis- (AP-) Herba Taxilli (HT) in the treatment of osteoarthritis (OA). METHODS: We selected Traditional Chinese Medicine Systems Pharmacology platform (TCMSP) to filtrate the practical compone...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhao, Jie, Zhao, Fu-Chang, Li, Gang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9814887/
https://www.ncbi.nlm.nih.gov/pubmed/36619785
http://dx.doi.org/10.1155/2022/4286168
_version_ 1784864238132527104
author Zhao, Jie
Zhao, Fu-Chang
Li, Gang
author_facet Zhao, Jie
Zhao, Fu-Chang
Li, Gang
author_sort Zhao, Jie
collection PubMed
description OBJECTIVE: Using network pharmacology and molecular docking, we explored the mechanism of Angelicae Pubescentis- (AP-) Herba Taxilli (HT) in the treatment of osteoarthritis (OA). METHODS: We selected Traditional Chinese Medicine Systems Pharmacology platform (TCMSP) to filtrate the practical components and targets of AP-HT. The disease targets of “osteoarthritis (OA)” were collected by GeneCards, DrugBank, TTD, OMIM, and PharmGKB databases, and the component-target interaction network was established by Cytoscape 3.9.1. Then, we set the protein-protein interaction (PPI) network by the STRING platform and visualized by Cytoscape 3.9.1. We also conducted Gene Ontology (GO) analysis and Kyoto Encyclopedia of Gene and Genome (KEGG) pathway enrichment analysis via the bioinformatics platform. Finally, we performed molecular docking using PyMOL 2.3.0 and AutoDock Vina software. RESULTS: 11 potential compounds were selected, and 1007 OA disease targets were collected. Ninety-four main targets of the AP-HT compound in the treatment of OA have been defined. PPI network demonstrated that JUN, RELA, TNF, IL6, MAPK1, TP53, AKT1, FOS, IL10, and MYC might serve as the critical targets of AP-HT for the treatment of OA. Moreover, membrane raft, membrane microdomain, cellular response to chemical stress, and cytokine receptor binding may play essential roles in the treatment of OA via GO analysis. The main functional pathways involved in these critical targets include fluid shear stress and atherosclerosis, lipid and atherosclerosis, IL-17 signaling pathway, age-range signaling pathway in diabetic composites, and TNF signaling pathway via KEGG analysis. The results of molecular docking showed that the critical ingredients of AP-HT had an excellent affinity to related nuclear genes.
format Online
Article
Text
id pubmed-9814887
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-98148872023-01-06 A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis Zhao, Jie Zhao, Fu-Chang Li, Gang Comput Math Methods Med Research Article OBJECTIVE: Using network pharmacology and molecular docking, we explored the mechanism of Angelicae Pubescentis- (AP-) Herba Taxilli (HT) in the treatment of osteoarthritis (OA). METHODS: We selected Traditional Chinese Medicine Systems Pharmacology platform (TCMSP) to filtrate the practical components and targets of AP-HT. The disease targets of “osteoarthritis (OA)” were collected by GeneCards, DrugBank, TTD, OMIM, and PharmGKB databases, and the component-target interaction network was established by Cytoscape 3.9.1. Then, we set the protein-protein interaction (PPI) network by the STRING platform and visualized by Cytoscape 3.9.1. We also conducted Gene Ontology (GO) analysis and Kyoto Encyclopedia of Gene and Genome (KEGG) pathway enrichment analysis via the bioinformatics platform. Finally, we performed molecular docking using PyMOL 2.3.0 and AutoDock Vina software. RESULTS: 11 potential compounds were selected, and 1007 OA disease targets were collected. Ninety-four main targets of the AP-HT compound in the treatment of OA have been defined. PPI network demonstrated that JUN, RELA, TNF, IL6, MAPK1, TP53, AKT1, FOS, IL10, and MYC might serve as the critical targets of AP-HT for the treatment of OA. Moreover, membrane raft, membrane microdomain, cellular response to chemical stress, and cytokine receptor binding may play essential roles in the treatment of OA via GO analysis. The main functional pathways involved in these critical targets include fluid shear stress and atherosclerosis, lipid and atherosclerosis, IL-17 signaling pathway, age-range signaling pathway in diabetic composites, and TNF signaling pathway via KEGG analysis. The results of molecular docking showed that the critical ingredients of AP-HT had an excellent affinity to related nuclear genes. Hindawi 2022-12-28 /pmc/articles/PMC9814887/ /pubmed/36619785 http://dx.doi.org/10.1155/2022/4286168 Text en Copyright © 2022 Jie Zhao et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zhao, Jie
Zhao, Fu-Chang
Li, Gang
A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis
title A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis
title_full A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis
title_fullStr A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis
title_full_unstemmed A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis
title_short A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis
title_sort network pharmacology-based study of potential targets of angelicae pubescentis-herba taxilli compound for the treatment of osteoarthritis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9814887/
https://www.ncbi.nlm.nih.gov/pubmed/36619785
http://dx.doi.org/10.1155/2022/4286168
work_keys_str_mv AT zhaojie anetworkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis
AT zhaofuchang anetworkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis
AT ligang anetworkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis
AT zhaojie networkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis
AT zhaofuchang networkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis
AT ligang networkpharmacologybasedstudyofpotentialtargetsofangelicaepubescentisherbataxillicompoundforthetreatmentofosteoarthritis