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Global analysis of the energy landscapes of molecular crystal structures by applying the threshold algorithm
Polymorphism in molecular crystals has important consequences for the control of materials properties and our understanding of crystallization. Computational methods, including crystal structure prediction, have provided important insight into polymorphism, but have usually been limited to assessing...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9814927/ https://www.ncbi.nlm.nih.gov/pubmed/36697680 http://dx.doi.org/10.1038/s42004-022-00705-4 |
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author | Yang, Shiyue Day, Graeme M. |
author_facet | Yang, Shiyue Day, Graeme M. |
author_sort | Yang, Shiyue |
collection | PubMed |
description | Polymorphism in molecular crystals has important consequences for the control of materials properties and our understanding of crystallization. Computational methods, including crystal structure prediction, have provided important insight into polymorphism, but have usually been limited to assessing the relative energies of structures. We describe the implementation of the Monte Carlo threshold algorithm as a method to provide an estimate of the energy barriers separating crystal structures. By sampling the local energy minima accessible from multiple starting structures, the simulations yield a global picture of the crystal energy landscapes and provide valuable information on the depth of the energy minima associated with crystal structures. We present results from applying the threshold algorithm to four polymorphic organic molecular crystals, examine the influence of applying space group symmetry constraints during the simulations, and discuss the relationship between the structure of the energy landscape and the intermolecular interactions present in the crystals. |
format | Online Article Text |
id | pubmed-9814927 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-98149272023-01-10 Global analysis of the energy landscapes of molecular crystal structures by applying the threshold algorithm Yang, Shiyue Day, Graeme M. Commun Chem Article Polymorphism in molecular crystals has important consequences for the control of materials properties and our understanding of crystallization. Computational methods, including crystal structure prediction, have provided important insight into polymorphism, but have usually been limited to assessing the relative energies of structures. We describe the implementation of the Monte Carlo threshold algorithm as a method to provide an estimate of the energy barriers separating crystal structures. By sampling the local energy minima accessible from multiple starting structures, the simulations yield a global picture of the crystal energy landscapes and provide valuable information on the depth of the energy minima associated with crystal structures. We present results from applying the threshold algorithm to four polymorphic organic molecular crystals, examine the influence of applying space group symmetry constraints during the simulations, and discuss the relationship between the structure of the energy landscape and the intermolecular interactions present in the crystals. Nature Publishing Group UK 2022-07-28 /pmc/articles/PMC9814927/ /pubmed/36697680 http://dx.doi.org/10.1038/s42004-022-00705-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Yang, Shiyue Day, Graeme M. Global analysis of the energy landscapes of molecular crystal structures by applying the threshold algorithm |
title | Global analysis of the energy landscapes of molecular crystal structures by applying the threshold algorithm |
title_full | Global analysis of the energy landscapes of molecular crystal structures by applying the threshold algorithm |
title_fullStr | Global analysis of the energy landscapes of molecular crystal structures by applying the threshold algorithm |
title_full_unstemmed | Global analysis of the energy landscapes of molecular crystal structures by applying the threshold algorithm |
title_short | Global analysis of the energy landscapes of molecular crystal structures by applying the threshold algorithm |
title_sort | global analysis of the energy landscapes of molecular crystal structures by applying the threshold algorithm |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9814927/ https://www.ncbi.nlm.nih.gov/pubmed/36697680 http://dx.doi.org/10.1038/s42004-022-00705-4 |
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