The complete chloroplast genome of Viola grypoceras (Violaceae)

We constructed and characterized the chloroplast genome of Viola grypoceras via de novo assembly of Illumina data. The complete circular chloroplast genome is 158,357 bp long and contains four parts: a large single-copy (LSC) region of 86,764 bp, a small single-copy (SSC) region of 17,345 bp, and tw...

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Autores principales: Park, Jin Hee, Lee, Minjee, Lee, Yi, Lee, Jungho
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9815259/
https://www.ncbi.nlm.nih.gov/pubmed/36620316
http://dx.doi.org/10.1080/23802359.2022.2160216
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author Park, Jin Hee
Lee, Minjee
Lee, Yi
Lee, Jungho
author_facet Park, Jin Hee
Lee, Minjee
Lee, Yi
Lee, Jungho
author_sort Park, Jin Hee
collection PubMed
description We constructed and characterized the chloroplast genome of Viola grypoceras via de novo assembly of Illumina data. The complete circular chloroplast genome is 158,357 bp long and contains four parts: a large single-copy (LSC) region of 86,764 bp, a small single-copy (SSC) region of 17,345 bp, and two inverted-repeat regions (IRa and IRb) of 27,124 bp each. Genome annotation predicted that this genome harbors 111 genes, comprising 77 protein-coding genes, 30 transfer RNA (tRNA) genes, and four ribosomal RNA (rRNA) genes. Phylogenetic analysis demonstrated that V. grypoceras shares a close systematic relationship with V. mirabilis and V. websteri by forming a basal clade in the genus Viola.
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spelling pubmed-98152592023-01-06 The complete chloroplast genome of Viola grypoceras (Violaceae) Park, Jin Hee Lee, Minjee Lee, Yi Lee, Jungho Mitochondrial DNA B Resour Mitogenome Announcement We constructed and characterized the chloroplast genome of Viola grypoceras via de novo assembly of Illumina data. The complete circular chloroplast genome is 158,357 bp long and contains four parts: a large single-copy (LSC) region of 86,764 bp, a small single-copy (SSC) region of 17,345 bp, and two inverted-repeat regions (IRa and IRb) of 27,124 bp each. Genome annotation predicted that this genome harbors 111 genes, comprising 77 protein-coding genes, 30 transfer RNA (tRNA) genes, and four ribosomal RNA (rRNA) genes. Phylogenetic analysis demonstrated that V. grypoceras shares a close systematic relationship with V. mirabilis and V. websteri by forming a basal clade in the genus Viola. Taylor & Francis 2023-01-02 /pmc/articles/PMC9815259/ /pubmed/36620316 http://dx.doi.org/10.1080/23802359.2022.2160216 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Park, Jin Hee
Lee, Minjee
Lee, Yi
Lee, Jungho
The complete chloroplast genome of Viola grypoceras (Violaceae)
title The complete chloroplast genome of Viola grypoceras (Violaceae)
title_full The complete chloroplast genome of Viola grypoceras (Violaceae)
title_fullStr The complete chloroplast genome of Viola grypoceras (Violaceae)
title_full_unstemmed The complete chloroplast genome of Viola grypoceras (Violaceae)
title_short The complete chloroplast genome of Viola grypoceras (Violaceae)
title_sort complete chloroplast genome of viola grypoceras (violaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9815259/
https://www.ncbi.nlm.nih.gov/pubmed/36620316
http://dx.doi.org/10.1080/23802359.2022.2160216
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