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Ten simple rules for using public biological data for your research

With an increasing amount of biological data available publicly, there is a need for a guide on how to successfully download and use this data. The 10 simple rules for using public biological data are: (1) use public data purposefully in your research; (2) evaluate data for your use case; (3) check...

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Autores principales: Oza, Vishal H., Whitlock, Jordan H., Wilk, Elizabeth J., Uno-Antonison, Angelina, Wilk, Brandon, Gajapathy, Manavalan, Howton, Timothy C., Trull, Austyn, Ianov, Lara, Worthey, Elizabeth A., Lasseigne, Brittany N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9815577/
https://www.ncbi.nlm.nih.gov/pubmed/36602970
http://dx.doi.org/10.1371/journal.pcbi.1010749
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author Oza, Vishal H.
Whitlock, Jordan H.
Wilk, Elizabeth J.
Uno-Antonison, Angelina
Wilk, Brandon
Gajapathy, Manavalan
Howton, Timothy C.
Trull, Austyn
Ianov, Lara
Worthey, Elizabeth A.
Lasseigne, Brittany N.
author_facet Oza, Vishal H.
Whitlock, Jordan H.
Wilk, Elizabeth J.
Uno-Antonison, Angelina
Wilk, Brandon
Gajapathy, Manavalan
Howton, Timothy C.
Trull, Austyn
Ianov, Lara
Worthey, Elizabeth A.
Lasseigne, Brittany N.
author_sort Oza, Vishal H.
collection PubMed
description With an increasing amount of biological data available publicly, there is a need for a guide on how to successfully download and use this data. The 10 simple rules for using public biological data are: (1) use public data purposefully in your research; (2) evaluate data for your use case; (3) check data reuse requirements and embargoes; (4) be aware of ethics for data reuse; (5) plan for data storage and compute requirements; (6) know what you are downloading; (7) download programmatically and verify integrity; (8) properly cite data; (9) make reprocessed data and models Findable, Accessible, Interoperable, and Reusable (FAIR) and share; and (10) make pipelines and code FAIR and share. These rules are intended as a guide for researchers wanting to make use of available data and to increase data reuse and reproducibility.
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spelling pubmed-98155772023-01-06 Ten simple rules for using public biological data for your research Oza, Vishal H. Whitlock, Jordan H. Wilk, Elizabeth J. Uno-Antonison, Angelina Wilk, Brandon Gajapathy, Manavalan Howton, Timothy C. Trull, Austyn Ianov, Lara Worthey, Elizabeth A. Lasseigne, Brittany N. PLoS Comput Biol Education With an increasing amount of biological data available publicly, there is a need for a guide on how to successfully download and use this data. The 10 simple rules for using public biological data are: (1) use public data purposefully in your research; (2) evaluate data for your use case; (3) check data reuse requirements and embargoes; (4) be aware of ethics for data reuse; (5) plan for data storage and compute requirements; (6) know what you are downloading; (7) download programmatically and verify integrity; (8) properly cite data; (9) make reprocessed data and models Findable, Accessible, Interoperable, and Reusable (FAIR) and share; and (10) make pipelines and code FAIR and share. These rules are intended as a guide for researchers wanting to make use of available data and to increase data reuse and reproducibility. Public Library of Science 2023-01-05 /pmc/articles/PMC9815577/ /pubmed/36602970 http://dx.doi.org/10.1371/journal.pcbi.1010749 Text en © 2023 Oza et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Education
Oza, Vishal H.
Whitlock, Jordan H.
Wilk, Elizabeth J.
Uno-Antonison, Angelina
Wilk, Brandon
Gajapathy, Manavalan
Howton, Timothy C.
Trull, Austyn
Ianov, Lara
Worthey, Elizabeth A.
Lasseigne, Brittany N.
Ten simple rules for using public biological data for your research
title Ten simple rules for using public biological data for your research
title_full Ten simple rules for using public biological data for your research
title_fullStr Ten simple rules for using public biological data for your research
title_full_unstemmed Ten simple rules for using public biological data for your research
title_short Ten simple rules for using public biological data for your research
title_sort ten simple rules for using public biological data for your research
topic Education
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9815577/
https://www.ncbi.nlm.nih.gov/pubmed/36602970
http://dx.doi.org/10.1371/journal.pcbi.1010749
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