Cargando…
Ten simple rules for using public biological data for your research
With an increasing amount of biological data available publicly, there is a need for a guide on how to successfully download and use this data. The 10 simple rules for using public biological data are: (1) use public data purposefully in your research; (2) evaluate data for your use case; (3) check...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9815577/ https://www.ncbi.nlm.nih.gov/pubmed/36602970 http://dx.doi.org/10.1371/journal.pcbi.1010749 |
_version_ | 1784864350761123840 |
---|---|
author | Oza, Vishal H. Whitlock, Jordan H. Wilk, Elizabeth J. Uno-Antonison, Angelina Wilk, Brandon Gajapathy, Manavalan Howton, Timothy C. Trull, Austyn Ianov, Lara Worthey, Elizabeth A. Lasseigne, Brittany N. |
author_facet | Oza, Vishal H. Whitlock, Jordan H. Wilk, Elizabeth J. Uno-Antonison, Angelina Wilk, Brandon Gajapathy, Manavalan Howton, Timothy C. Trull, Austyn Ianov, Lara Worthey, Elizabeth A. Lasseigne, Brittany N. |
author_sort | Oza, Vishal H. |
collection | PubMed |
description | With an increasing amount of biological data available publicly, there is a need for a guide on how to successfully download and use this data. The 10 simple rules for using public biological data are: (1) use public data purposefully in your research; (2) evaluate data for your use case; (3) check data reuse requirements and embargoes; (4) be aware of ethics for data reuse; (5) plan for data storage and compute requirements; (6) know what you are downloading; (7) download programmatically and verify integrity; (8) properly cite data; (9) make reprocessed data and models Findable, Accessible, Interoperable, and Reusable (FAIR) and share; and (10) make pipelines and code FAIR and share. These rules are intended as a guide for researchers wanting to make use of available data and to increase data reuse and reproducibility. |
format | Online Article Text |
id | pubmed-9815577 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-98155772023-01-06 Ten simple rules for using public biological data for your research Oza, Vishal H. Whitlock, Jordan H. Wilk, Elizabeth J. Uno-Antonison, Angelina Wilk, Brandon Gajapathy, Manavalan Howton, Timothy C. Trull, Austyn Ianov, Lara Worthey, Elizabeth A. Lasseigne, Brittany N. PLoS Comput Biol Education With an increasing amount of biological data available publicly, there is a need for a guide on how to successfully download and use this data. The 10 simple rules for using public biological data are: (1) use public data purposefully in your research; (2) evaluate data for your use case; (3) check data reuse requirements and embargoes; (4) be aware of ethics for data reuse; (5) plan for data storage and compute requirements; (6) know what you are downloading; (7) download programmatically and verify integrity; (8) properly cite data; (9) make reprocessed data and models Findable, Accessible, Interoperable, and Reusable (FAIR) and share; and (10) make pipelines and code FAIR and share. These rules are intended as a guide for researchers wanting to make use of available data and to increase data reuse and reproducibility. Public Library of Science 2023-01-05 /pmc/articles/PMC9815577/ /pubmed/36602970 http://dx.doi.org/10.1371/journal.pcbi.1010749 Text en © 2023 Oza et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Education Oza, Vishal H. Whitlock, Jordan H. Wilk, Elizabeth J. Uno-Antonison, Angelina Wilk, Brandon Gajapathy, Manavalan Howton, Timothy C. Trull, Austyn Ianov, Lara Worthey, Elizabeth A. Lasseigne, Brittany N. Ten simple rules for using public biological data for your research |
title | Ten simple rules for using public biological data for your research |
title_full | Ten simple rules for using public biological data for your research |
title_fullStr | Ten simple rules for using public biological data for your research |
title_full_unstemmed | Ten simple rules for using public biological data for your research |
title_short | Ten simple rules for using public biological data for your research |
title_sort | ten simple rules for using public biological data for your research |
topic | Education |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9815577/ https://www.ncbi.nlm.nih.gov/pubmed/36602970 http://dx.doi.org/10.1371/journal.pcbi.1010749 |
work_keys_str_mv | AT ozavishalh tensimplerulesforusingpublicbiologicaldataforyourresearch AT whitlockjordanh tensimplerulesforusingpublicbiologicaldataforyourresearch AT wilkelizabethj tensimplerulesforusingpublicbiologicaldataforyourresearch AT unoantonisonangelina tensimplerulesforusingpublicbiologicaldataforyourresearch AT wilkbrandon tensimplerulesforusingpublicbiologicaldataforyourresearch AT gajapathymanavalan tensimplerulesforusingpublicbiologicaldataforyourresearch AT howtontimothyc tensimplerulesforusingpublicbiologicaldataforyourresearch AT trullaustyn tensimplerulesforusingpublicbiologicaldataforyourresearch AT ianovlara tensimplerulesforusingpublicbiologicaldataforyourresearch AT wortheyelizabetha tensimplerulesforusingpublicbiologicaldataforyourresearch AT lasseignebrittanyn tensimplerulesforusingpublicbiologicaldataforyourresearch |