Cargando…

Coiled-Coil Domain-Containing Protein 45 Is a Potential Prognostic Biomarker and Is Associated with Immune Cell Enrichment of Hepatocellular Carcinoma

OBJECTIVE: The role of coiled-coil domain-containing protein 45 (CCDC45) in the development of hepatocellular carcinoma (HCC) has not been reported. The present study is aimed at investigating the expression and prognosis of CCDC45 in HCC and its relevance to immune infiltration. METHODS: We conduct...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Shuqing, Jia, Lei, Quan, Bing, Rong, Guang, Li, Min, Xie, Ronggen, Cai, Yanling, Bi, Yuzhen, Han, Siyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9815921/
https://www.ncbi.nlm.nih.gov/pubmed/36618966
http://dx.doi.org/10.1155/2022/7745315
_version_ 1784864419688218624
author Liu, Shuqing
Jia, Lei
Quan, Bing
Rong, Guang
Li, Min
Xie, Ronggen
Cai, Yanling
Bi, Yuzhen
Han, Siyuan
author_facet Liu, Shuqing
Jia, Lei
Quan, Bing
Rong, Guang
Li, Min
Xie, Ronggen
Cai, Yanling
Bi, Yuzhen
Han, Siyuan
author_sort Liu, Shuqing
collection PubMed
description OBJECTIVE: The role of coiled-coil domain-containing protein 45 (CCDC45) in the development of hepatocellular carcinoma (HCC) has not been reported. The present study is aimed at investigating the expression and prognosis of CCDC45 in HCC and its relevance to immune infiltration. METHODS: We conducted CCDC45 expression analysis using The Cancer Genome Atlas (TCGA) tumor database, the Human Protein Atlas (HPA) database, and the Tumor Immunological Evaluation Resource (TIMER). We used the University of Alabama at Birmingham Cancer data analysis Portal (UALCAN) database to show the correlation of CCDC45 with clinical features. We examined the prognostic impact of CCDC45 expression levels on HCC patients with the Kaplan-Meier mapper database. Genes coexpressed with CCDC45 and its regulators were also identified using LinkedOmics. The enriched Gene Ontology (GO) categories and associated signaling pathways were estimated using GO, Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Assay (GSEA) pathway data. Correlations between CCDC45 and cancer immune infiltration was analyzed through the TIMER and an integrated repository portal for Tumor-Immune System Interactions (TISIDB) databases. RESULTS: The expression of CCDC45 was elevated in HCC tissues compared to adjacent liver tissues, and overexpression of CCDC45 was significantly correlated with tumor stage. Furthermore, HCC patients with CCDC45 overexpression had a shorter overall survival (OS). Functional network analysis indicated that CCDC45 was involved in homologous recombination, spliceosome, and DNA replication. Interestingly, CCDC45 expression was positively correlated with the level of immune cell infiltration. CONCLUSIONS: CCDC45 is associated with prognosis and immune infiltration of HCC and may be a potential therapeutic target for HCC.
format Online
Article
Text
id pubmed-9815921
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-98159212023-01-06 Coiled-Coil Domain-Containing Protein 45 Is a Potential Prognostic Biomarker and Is Associated with Immune Cell Enrichment of Hepatocellular Carcinoma Liu, Shuqing Jia, Lei Quan, Bing Rong, Guang Li, Min Xie, Ronggen Cai, Yanling Bi, Yuzhen Han, Siyuan Dis Markers Research Article OBJECTIVE: The role of coiled-coil domain-containing protein 45 (CCDC45) in the development of hepatocellular carcinoma (HCC) has not been reported. The present study is aimed at investigating the expression and prognosis of CCDC45 in HCC and its relevance to immune infiltration. METHODS: We conducted CCDC45 expression analysis using The Cancer Genome Atlas (TCGA) tumor database, the Human Protein Atlas (HPA) database, and the Tumor Immunological Evaluation Resource (TIMER). We used the University of Alabama at Birmingham Cancer data analysis Portal (UALCAN) database to show the correlation of CCDC45 with clinical features. We examined the prognostic impact of CCDC45 expression levels on HCC patients with the Kaplan-Meier mapper database. Genes coexpressed with CCDC45 and its regulators were also identified using LinkedOmics. The enriched Gene Ontology (GO) categories and associated signaling pathways were estimated using GO, Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Assay (GSEA) pathway data. Correlations between CCDC45 and cancer immune infiltration was analyzed through the TIMER and an integrated repository portal for Tumor-Immune System Interactions (TISIDB) databases. RESULTS: The expression of CCDC45 was elevated in HCC tissues compared to adjacent liver tissues, and overexpression of CCDC45 was significantly correlated with tumor stage. Furthermore, HCC patients with CCDC45 overexpression had a shorter overall survival (OS). Functional network analysis indicated that CCDC45 was involved in homologous recombination, spliceosome, and DNA replication. Interestingly, CCDC45 expression was positively correlated with the level of immune cell infiltration. CONCLUSIONS: CCDC45 is associated with prognosis and immune infiltration of HCC and may be a potential therapeutic target for HCC. Hindawi 2022-12-29 /pmc/articles/PMC9815921/ /pubmed/36618966 http://dx.doi.org/10.1155/2022/7745315 Text en Copyright © 2022 Shuqing Liu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Liu, Shuqing
Jia, Lei
Quan, Bing
Rong, Guang
Li, Min
Xie, Ronggen
Cai, Yanling
Bi, Yuzhen
Han, Siyuan
Coiled-Coil Domain-Containing Protein 45 Is a Potential Prognostic Biomarker and Is Associated with Immune Cell Enrichment of Hepatocellular Carcinoma
title Coiled-Coil Domain-Containing Protein 45 Is a Potential Prognostic Biomarker and Is Associated with Immune Cell Enrichment of Hepatocellular Carcinoma
title_full Coiled-Coil Domain-Containing Protein 45 Is a Potential Prognostic Biomarker and Is Associated with Immune Cell Enrichment of Hepatocellular Carcinoma
title_fullStr Coiled-Coil Domain-Containing Protein 45 Is a Potential Prognostic Biomarker and Is Associated with Immune Cell Enrichment of Hepatocellular Carcinoma
title_full_unstemmed Coiled-Coil Domain-Containing Protein 45 Is a Potential Prognostic Biomarker and Is Associated with Immune Cell Enrichment of Hepatocellular Carcinoma
title_short Coiled-Coil Domain-Containing Protein 45 Is a Potential Prognostic Biomarker and Is Associated with Immune Cell Enrichment of Hepatocellular Carcinoma
title_sort coiled-coil domain-containing protein 45 is a potential prognostic biomarker and is associated with immune cell enrichment of hepatocellular carcinoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9815921/
https://www.ncbi.nlm.nih.gov/pubmed/36618966
http://dx.doi.org/10.1155/2022/7745315
work_keys_str_mv AT liushuqing coiledcoildomaincontainingprotein45isapotentialprognosticbiomarkerandisassociatedwithimmunecellenrichmentofhepatocellularcarcinoma
AT jialei coiledcoildomaincontainingprotein45isapotentialprognosticbiomarkerandisassociatedwithimmunecellenrichmentofhepatocellularcarcinoma
AT quanbing coiledcoildomaincontainingprotein45isapotentialprognosticbiomarkerandisassociatedwithimmunecellenrichmentofhepatocellularcarcinoma
AT rongguang coiledcoildomaincontainingprotein45isapotentialprognosticbiomarkerandisassociatedwithimmunecellenrichmentofhepatocellularcarcinoma
AT limin coiledcoildomaincontainingprotein45isapotentialprognosticbiomarkerandisassociatedwithimmunecellenrichmentofhepatocellularcarcinoma
AT xieronggen coiledcoildomaincontainingprotein45isapotentialprognosticbiomarkerandisassociatedwithimmunecellenrichmentofhepatocellularcarcinoma
AT caiyanling coiledcoildomaincontainingprotein45isapotentialprognosticbiomarkerandisassociatedwithimmunecellenrichmentofhepatocellularcarcinoma
AT biyuzhen coiledcoildomaincontainingprotein45isapotentialprognosticbiomarkerandisassociatedwithimmunecellenrichmentofhepatocellularcarcinoma
AT hansiyuan coiledcoildomaincontainingprotein45isapotentialprognosticbiomarkerandisassociatedwithimmunecellenrichmentofhepatocellularcarcinoma