Characterization of the complete chloroplast genome of Trailliaedoxa gracilis (Rubiaceae)

Trailliaedoxa gracilis (Rubiaceae) is a Chinese endemic monotypic genus distributed in southwestern China. This study reported the complete chloroplast genome of T. gracilis assembled from Illumina sequencing reads. The chloroplast genome size is 152,407 bp, containing a single large copy (LSC) regi...

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Autores principales: Tan, Fengxiao, Li, Weixi, Lü, Jiaru, Pei, Chengruo, Li, Qingwei, Jia, Youxin, Wang, Jianwu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Plastome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9817128/
https://www.ncbi.nlm.nih.gov/pubmed/36620313
http://dx.doi.org/10.1080/23802359.2022.2155491
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author Tan, Fengxiao
Li, Weixi
Lü, Jiaru
Pei, Chengruo
Li, Qingwei
Jia, Youxin
Wang, Jianwu
author_facet Tan, Fengxiao
Li, Weixi
Lü, Jiaru
Pei, Chengruo
Li, Qingwei
Jia, Youxin
Wang, Jianwu
author_sort Tan, Fengxiao
collection PubMed
description Trailliaedoxa gracilis (Rubiaceae) is a Chinese endemic monotypic genus distributed in southwestern China. This study reported the complete chloroplast genome of T. gracilis assembled from Illumina sequencing reads. The chloroplast genome size is 152,407 bp, containing a single large copy (LSC) region of 82,957 bp, a short single copy (SSC) region of 17,936 bp, and a pair of inverted repeats (IRs) of 25,757 bp. A total of 127 genes were found, including 82 protein-coding genes, 37 tRNA genes, and eight rRNA genes. A phylogenetic analysis using the maximum likelihood algorithm revealed that T. gracilis belonged to the subfamily Ixoroideae and had the closest relationship with Scyphiphora hydrophyllacea.
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spelling pubmed-98171282023-01-07 Characterization of the complete chloroplast genome of Trailliaedoxa gracilis (Rubiaceae) Tan, Fengxiao Li, Weixi Lü, Jiaru Pei, Chengruo Li, Qingwei Jia, Youxin Wang, Jianwu Mitochondrial DNA B Resour Plastome Announcement Trailliaedoxa gracilis (Rubiaceae) is a Chinese endemic monotypic genus distributed in southwestern China. This study reported the complete chloroplast genome of T. gracilis assembled from Illumina sequencing reads. The chloroplast genome size is 152,407 bp, containing a single large copy (LSC) region of 82,957 bp, a short single copy (SSC) region of 17,936 bp, and a pair of inverted repeats (IRs) of 25,757 bp. A total of 127 genes were found, including 82 protein-coding genes, 37 tRNA genes, and eight rRNA genes. A phylogenetic analysis using the maximum likelihood algorithm revealed that T. gracilis belonged to the subfamily Ixoroideae and had the closest relationship with Scyphiphora hydrophyllacea. Taylor & Francis 2023-01-01 /pmc/articles/PMC9817128/ /pubmed/36620313 http://dx.doi.org/10.1080/23802359.2022.2155491 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Tan, Fengxiao
Li, Weixi
Lü, Jiaru
Pei, Chengruo
Li, Qingwei
Jia, Youxin
Wang, Jianwu
Characterization of the complete chloroplast genome of Trailliaedoxa gracilis (Rubiaceae)
title Characterization of the complete chloroplast genome of Trailliaedoxa gracilis (Rubiaceae)
title_full Characterization of the complete chloroplast genome of Trailliaedoxa gracilis (Rubiaceae)
title_fullStr Characterization of the complete chloroplast genome of Trailliaedoxa gracilis (Rubiaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Trailliaedoxa gracilis (Rubiaceae)
title_short Characterization of the complete chloroplast genome of Trailliaedoxa gracilis (Rubiaceae)
title_sort characterization of the complete chloroplast genome of trailliaedoxa gracilis (rubiaceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9817128/
https://www.ncbi.nlm.nih.gov/pubmed/36620313
http://dx.doi.org/10.1080/23802359.2022.2155491
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