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Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS

The assignment of aromatic side-chain spins has always been more challenging than assigning backbone and aliphatic spins. Selective labeling combined with mutagenesis has been the approach for assigning aromatic spins. This manuscript reports a method for assigning aromatic spins in a fully protonat...

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Autores principales: Ahlawat, Sahil, Mopidevi, Subbarao Mohana Venkata, Taware, Pravin P., Raran-Kurussi, Sreejith, Mote, Kaustubh R., Agarwal, Vipin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9817166/
https://www.ncbi.nlm.nih.gov/pubmed/36618437
http://dx.doi.org/10.1016/j.yjsbx.2022.100082
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author Ahlawat, Sahil
Mopidevi, Subbarao Mohana Venkata
Taware, Pravin P.
Raran-Kurussi, Sreejith
Mote, Kaustubh R.
Agarwal, Vipin
author_facet Ahlawat, Sahil
Mopidevi, Subbarao Mohana Venkata
Taware, Pravin P.
Raran-Kurussi, Sreejith
Mote, Kaustubh R.
Agarwal, Vipin
author_sort Ahlawat, Sahil
collection PubMed
description The assignment of aromatic side-chain spins has always been more challenging than assigning backbone and aliphatic spins. Selective labeling combined with mutagenesis has been the approach for assigning aromatic spins. This manuscript reports a method for assigning aromatic spins in a fully protonated protein by connecting them to the backbone atoms using a low-power TOBSY sequence. The pulse sequence employs residual polarization and sequential acquisitions techniques to record H(N)- and H(C)-detected spectra in a single experiment. The unambiguous assignment of aromatic spins also enables the characterization of (1)H–(1)H distance restraints involving aromatic spins. Broadband (RFDR) and selective (BASS-SD) recoupling sequences were used to generate H(N)-Η(C), H(C)-H(N) and H(C)-H(C) restraints involving the side-chain proton spins of aromatic residues. This approach has been demonstrated on a fully protonated U-[(13)C,(15)N] labeled GB1 sample at 95–100 kHz MAS.
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spelling pubmed-98171662023-01-07 Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS Ahlawat, Sahil Mopidevi, Subbarao Mohana Venkata Taware, Pravin P. Raran-Kurussi, Sreejith Mote, Kaustubh R. Agarwal, Vipin J Struct Biol X Advances in biomolecular structure and dynamics elucidation by solid-state NMR The assignment of aromatic side-chain spins has always been more challenging than assigning backbone and aliphatic spins. Selective labeling combined with mutagenesis has been the approach for assigning aromatic spins. This manuscript reports a method for assigning aromatic spins in a fully protonated protein by connecting them to the backbone atoms using a low-power TOBSY sequence. The pulse sequence employs residual polarization and sequential acquisitions techniques to record H(N)- and H(C)-detected spectra in a single experiment. The unambiguous assignment of aromatic spins also enables the characterization of (1)H–(1)H distance restraints involving aromatic spins. Broadband (RFDR) and selective (BASS-SD) recoupling sequences were used to generate H(N)-Η(C), H(C)-H(N) and H(C)-H(C) restraints involving the side-chain proton spins of aromatic residues. This approach has been demonstrated on a fully protonated U-[(13)C,(15)N] labeled GB1 sample at 95–100 kHz MAS. Elsevier 2022-12-29 /pmc/articles/PMC9817166/ /pubmed/36618437 http://dx.doi.org/10.1016/j.yjsbx.2022.100082 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Advances in biomolecular structure and dynamics elucidation by solid-state NMR
Ahlawat, Sahil
Mopidevi, Subbarao Mohana Venkata
Taware, Pravin P.
Raran-Kurussi, Sreejith
Mote, Kaustubh R.
Agarwal, Vipin
Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS
title Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS
title_full Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS
title_fullStr Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS
title_full_unstemmed Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS
title_short Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS
title_sort assignment of aromatic side-chain spins and characterization of their distance restraints at fast mas
topic Advances in biomolecular structure and dynamics elucidation by solid-state NMR
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9817166/
https://www.ncbi.nlm.nih.gov/pubmed/36618437
http://dx.doi.org/10.1016/j.yjsbx.2022.100082
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