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Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS
The assignment of aromatic side-chain spins has always been more challenging than assigning backbone and aliphatic spins. Selective labeling combined with mutagenesis has been the approach for assigning aromatic spins. This manuscript reports a method for assigning aromatic spins in a fully protonat...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9817166/ https://www.ncbi.nlm.nih.gov/pubmed/36618437 http://dx.doi.org/10.1016/j.yjsbx.2022.100082 |
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author | Ahlawat, Sahil Mopidevi, Subbarao Mohana Venkata Taware, Pravin P. Raran-Kurussi, Sreejith Mote, Kaustubh R. Agarwal, Vipin |
author_facet | Ahlawat, Sahil Mopidevi, Subbarao Mohana Venkata Taware, Pravin P. Raran-Kurussi, Sreejith Mote, Kaustubh R. Agarwal, Vipin |
author_sort | Ahlawat, Sahil |
collection | PubMed |
description | The assignment of aromatic side-chain spins has always been more challenging than assigning backbone and aliphatic spins. Selective labeling combined with mutagenesis has been the approach for assigning aromatic spins. This manuscript reports a method for assigning aromatic spins in a fully protonated protein by connecting them to the backbone atoms using a low-power TOBSY sequence. The pulse sequence employs residual polarization and sequential acquisitions techniques to record H(N)- and H(C)-detected spectra in a single experiment. The unambiguous assignment of aromatic spins also enables the characterization of (1)H–(1)H distance restraints involving aromatic spins. Broadband (RFDR) and selective (BASS-SD) recoupling sequences were used to generate H(N)-Η(C), H(C)-H(N) and H(C)-H(C) restraints involving the side-chain proton spins of aromatic residues. This approach has been demonstrated on a fully protonated U-[(13)C,(15)N] labeled GB1 sample at 95–100 kHz MAS. |
format | Online Article Text |
id | pubmed-9817166 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-98171662023-01-07 Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS Ahlawat, Sahil Mopidevi, Subbarao Mohana Venkata Taware, Pravin P. Raran-Kurussi, Sreejith Mote, Kaustubh R. Agarwal, Vipin J Struct Biol X Advances in biomolecular structure and dynamics elucidation by solid-state NMR The assignment of aromatic side-chain spins has always been more challenging than assigning backbone and aliphatic spins. Selective labeling combined with mutagenesis has been the approach for assigning aromatic spins. This manuscript reports a method for assigning aromatic spins in a fully protonated protein by connecting them to the backbone atoms using a low-power TOBSY sequence. The pulse sequence employs residual polarization and sequential acquisitions techniques to record H(N)- and H(C)-detected spectra in a single experiment. The unambiguous assignment of aromatic spins also enables the characterization of (1)H–(1)H distance restraints involving aromatic spins. Broadband (RFDR) and selective (BASS-SD) recoupling sequences were used to generate H(N)-Η(C), H(C)-H(N) and H(C)-H(C) restraints involving the side-chain proton spins of aromatic residues. This approach has been demonstrated on a fully protonated U-[(13)C,(15)N] labeled GB1 sample at 95–100 kHz MAS. Elsevier 2022-12-29 /pmc/articles/PMC9817166/ /pubmed/36618437 http://dx.doi.org/10.1016/j.yjsbx.2022.100082 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Advances in biomolecular structure and dynamics elucidation by solid-state NMR Ahlawat, Sahil Mopidevi, Subbarao Mohana Venkata Taware, Pravin P. Raran-Kurussi, Sreejith Mote, Kaustubh R. Agarwal, Vipin Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS |
title | Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS |
title_full | Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS |
title_fullStr | Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS |
title_full_unstemmed | Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS |
title_short | Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS |
title_sort | assignment of aromatic side-chain spins and characterization of their distance restraints at fast mas |
topic | Advances in biomolecular structure and dynamics elucidation by solid-state NMR |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9817166/ https://www.ncbi.nlm.nih.gov/pubmed/36618437 http://dx.doi.org/10.1016/j.yjsbx.2022.100082 |
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