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GAR-Net: Guided Attention Residual Network for Polyp Segmentation from Colonoscopy Video Frames

Colorectal Cancer is one of the most common cancers found in human beings, and polyps are the predecessor of this cancer. Accurate Computer-Aided polyp detection and segmentation system can help endoscopists to detect abnormal tissues and polyps during colonoscopy examination, thereby reducing the c...

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Autores principales: Raymann, Joel, Rajalakshmi, Ratnavel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9818392/
https://www.ncbi.nlm.nih.gov/pubmed/36611415
http://dx.doi.org/10.3390/diagnostics13010123
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author Raymann, Joel
Rajalakshmi, Ratnavel
author_facet Raymann, Joel
Rajalakshmi, Ratnavel
author_sort Raymann, Joel
collection PubMed
description Colorectal Cancer is one of the most common cancers found in human beings, and polyps are the predecessor of this cancer. Accurate Computer-Aided polyp detection and segmentation system can help endoscopists to detect abnormal tissues and polyps during colonoscopy examination, thereby reducing the chance of polyps growing into cancer. Many of the existing techniques fail to delineate the polyps accurately and produce a noisy/broken output map if the shape and size of the polyp are irregular or small. We propose an end-to-end pixel-wise polyp segmentation model named Guided Attention Residual Network (GAR-Net) by combining the power of both residual blocks and attention mechanisms to obtain a refined continuous segmentation map. An enhanced Residual Block is proposed that suppresses the noise and captures low-level feature maps, thereby facilitating information flow for a more accurate semantic segmentation. We propose a special learning technique with a novel attention mechanism called Guided Attention Learning that can capture the refined attention maps both in earlier and deeper layers regardless of the size and shape of the polyp. To study the effectiveness of the proposed GAR-Net, various experiments were carried out on two benchmark collections viz., CVC-ClinicDB (CVC-612) and Kvasir-SEG dataset. From the experimental evaluations, it is shown that GAR-Net outperforms other previously proposed models such as FCN8, SegNet, U-Net, U-Net with Gated Attention, ResUNet, and DeepLabv3. Our proposed model achieves 91% Dice co-efficient and 83.12% mean Intersection over Union (mIoU) on the benchmark CVC-ClinicDB (CVC-612) dataset and 89.15% dice co-efficient and 81.58% mean Intersection over Union (mIoU) on the Kvasir-SEG dataset. The proposed GAR-Net model provides a robust solution for polyp segmentation from colonoscopy video frames.
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spelling pubmed-98183922023-01-07 GAR-Net: Guided Attention Residual Network for Polyp Segmentation from Colonoscopy Video Frames Raymann, Joel Rajalakshmi, Ratnavel Diagnostics (Basel) Article Colorectal Cancer is one of the most common cancers found in human beings, and polyps are the predecessor of this cancer. Accurate Computer-Aided polyp detection and segmentation system can help endoscopists to detect abnormal tissues and polyps during colonoscopy examination, thereby reducing the chance of polyps growing into cancer. Many of the existing techniques fail to delineate the polyps accurately and produce a noisy/broken output map if the shape and size of the polyp are irregular or small. We propose an end-to-end pixel-wise polyp segmentation model named Guided Attention Residual Network (GAR-Net) by combining the power of both residual blocks and attention mechanisms to obtain a refined continuous segmentation map. An enhanced Residual Block is proposed that suppresses the noise and captures low-level feature maps, thereby facilitating information flow for a more accurate semantic segmentation. We propose a special learning technique with a novel attention mechanism called Guided Attention Learning that can capture the refined attention maps both in earlier and deeper layers regardless of the size and shape of the polyp. To study the effectiveness of the proposed GAR-Net, various experiments were carried out on two benchmark collections viz., CVC-ClinicDB (CVC-612) and Kvasir-SEG dataset. From the experimental evaluations, it is shown that GAR-Net outperforms other previously proposed models such as FCN8, SegNet, U-Net, U-Net with Gated Attention, ResUNet, and DeepLabv3. Our proposed model achieves 91% Dice co-efficient and 83.12% mean Intersection over Union (mIoU) on the benchmark CVC-ClinicDB (CVC-612) dataset and 89.15% dice co-efficient and 81.58% mean Intersection over Union (mIoU) on the Kvasir-SEG dataset. The proposed GAR-Net model provides a robust solution for polyp segmentation from colonoscopy video frames. MDPI 2022-12-30 /pmc/articles/PMC9818392/ /pubmed/36611415 http://dx.doi.org/10.3390/diagnostics13010123 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Raymann, Joel
Rajalakshmi, Ratnavel
GAR-Net: Guided Attention Residual Network for Polyp Segmentation from Colonoscopy Video Frames
title GAR-Net: Guided Attention Residual Network for Polyp Segmentation from Colonoscopy Video Frames
title_full GAR-Net: Guided Attention Residual Network for Polyp Segmentation from Colonoscopy Video Frames
title_fullStr GAR-Net: Guided Attention Residual Network for Polyp Segmentation from Colonoscopy Video Frames
title_full_unstemmed GAR-Net: Guided Attention Residual Network for Polyp Segmentation from Colonoscopy Video Frames
title_short GAR-Net: Guided Attention Residual Network for Polyp Segmentation from Colonoscopy Video Frames
title_sort gar-net: guided attention residual network for polyp segmentation from colonoscopy video frames
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9818392/
https://www.ncbi.nlm.nih.gov/pubmed/36611415
http://dx.doi.org/10.3390/diagnostics13010123
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