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Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models

Quantitative Structure–Activity Relationship (QSAR) models are commonly used for risk assessment of emerging contaminants. The objective of this study was to use a toxicity rank order (TRO) as an integrating parameter to improve the toxicity prediction by QSAR models. TRO for each contaminant was ca...

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Detalles Bibliográficos
Autores principales: Chen, Yuting, Dong, Yuying, Li, Le, Jiao, Jian, Liu, Sitong, Zou, Xuejun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9819504/
https://www.ncbi.nlm.nih.gov/pubmed/36613021
http://dx.doi.org/10.3390/ijerph20010701
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author Chen, Yuting
Dong, Yuying
Li, Le
Jiao, Jian
Liu, Sitong
Zou, Xuejun
author_facet Chen, Yuting
Dong, Yuying
Li, Le
Jiao, Jian
Liu, Sitong
Zou, Xuejun
author_sort Chen, Yuting
collection PubMed
description Quantitative Structure–Activity Relationship (QSAR) models are commonly used for risk assessment of emerging contaminants. The objective of this study was to use a toxicity rank order (TRO) as an integrating parameter to improve the toxicity prediction by QSAR models. TRO for each contaminant was calculated from collected toxicity data including acute toxicity concentration and no observed effect concentration. TRO values associated with toxicity mechanisms were used to classify pollutants into three modes of action consisting of narcosis, transition and reactivity. The selection principle of parameters for QSAR models was established and verified. It showed a reasonable prediction of toxicities caused by organophosphates and benzene derivatives, especially. Compared with traditional procedures, incorporating TRO showed an improved correlation coefficient of QSAR models by approximately 10%. Our study indicated that the proposed procedure can be used for screening modeling parameter data and improve the toxicity prediction by QSAR models, and this could facilitate prediction and evaluation of environmental contaminant toxicity.
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spelling pubmed-98195042023-01-07 Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models Chen, Yuting Dong, Yuying Li, Le Jiao, Jian Liu, Sitong Zou, Xuejun Int J Environ Res Public Health Article Quantitative Structure–Activity Relationship (QSAR) models are commonly used for risk assessment of emerging contaminants. The objective of this study was to use a toxicity rank order (TRO) as an integrating parameter to improve the toxicity prediction by QSAR models. TRO for each contaminant was calculated from collected toxicity data including acute toxicity concentration and no observed effect concentration. TRO values associated with toxicity mechanisms were used to classify pollutants into three modes of action consisting of narcosis, transition and reactivity. The selection principle of parameters for QSAR models was established and verified. It showed a reasonable prediction of toxicities caused by organophosphates and benzene derivatives, especially. Compared with traditional procedures, incorporating TRO showed an improved correlation coefficient of QSAR models by approximately 10%. Our study indicated that the proposed procedure can be used for screening modeling parameter data and improve the toxicity prediction by QSAR models, and this could facilitate prediction and evaluation of environmental contaminant toxicity. MDPI 2022-12-30 /pmc/articles/PMC9819504/ /pubmed/36613021 http://dx.doi.org/10.3390/ijerph20010701 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chen, Yuting
Dong, Yuying
Li, Le
Jiao, Jian
Liu, Sitong
Zou, Xuejun
Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models
title Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models
title_full Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models
title_fullStr Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models
title_full_unstemmed Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models
title_short Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models
title_sort toxicity rank order (tro) as a new approach for toxicity prediction by qsar models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9819504/
https://www.ncbi.nlm.nih.gov/pubmed/36613021
http://dx.doi.org/10.3390/ijerph20010701
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