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Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models
Quantitative Structure–Activity Relationship (QSAR) models are commonly used for risk assessment of emerging contaminants. The objective of this study was to use a toxicity rank order (TRO) as an integrating parameter to improve the toxicity prediction by QSAR models. TRO for each contaminant was ca...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9819504/ https://www.ncbi.nlm.nih.gov/pubmed/36613021 http://dx.doi.org/10.3390/ijerph20010701 |
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author | Chen, Yuting Dong, Yuying Li, Le Jiao, Jian Liu, Sitong Zou, Xuejun |
author_facet | Chen, Yuting Dong, Yuying Li, Le Jiao, Jian Liu, Sitong Zou, Xuejun |
author_sort | Chen, Yuting |
collection | PubMed |
description | Quantitative Structure–Activity Relationship (QSAR) models are commonly used for risk assessment of emerging contaminants. The objective of this study was to use a toxicity rank order (TRO) as an integrating parameter to improve the toxicity prediction by QSAR models. TRO for each contaminant was calculated from collected toxicity data including acute toxicity concentration and no observed effect concentration. TRO values associated with toxicity mechanisms were used to classify pollutants into three modes of action consisting of narcosis, transition and reactivity. The selection principle of parameters for QSAR models was established and verified. It showed a reasonable prediction of toxicities caused by organophosphates and benzene derivatives, especially. Compared with traditional procedures, incorporating TRO showed an improved correlation coefficient of QSAR models by approximately 10%. Our study indicated that the proposed procedure can be used for screening modeling parameter data and improve the toxicity prediction by QSAR models, and this could facilitate prediction and evaluation of environmental contaminant toxicity. |
format | Online Article Text |
id | pubmed-9819504 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-98195042023-01-07 Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models Chen, Yuting Dong, Yuying Li, Le Jiao, Jian Liu, Sitong Zou, Xuejun Int J Environ Res Public Health Article Quantitative Structure–Activity Relationship (QSAR) models are commonly used for risk assessment of emerging contaminants. The objective of this study was to use a toxicity rank order (TRO) as an integrating parameter to improve the toxicity prediction by QSAR models. TRO for each contaminant was calculated from collected toxicity data including acute toxicity concentration and no observed effect concentration. TRO values associated with toxicity mechanisms were used to classify pollutants into three modes of action consisting of narcosis, transition and reactivity. The selection principle of parameters for QSAR models was established and verified. It showed a reasonable prediction of toxicities caused by organophosphates and benzene derivatives, especially. Compared with traditional procedures, incorporating TRO showed an improved correlation coefficient of QSAR models by approximately 10%. Our study indicated that the proposed procedure can be used for screening modeling parameter data and improve the toxicity prediction by QSAR models, and this could facilitate prediction and evaluation of environmental contaminant toxicity. MDPI 2022-12-30 /pmc/articles/PMC9819504/ /pubmed/36613021 http://dx.doi.org/10.3390/ijerph20010701 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Chen, Yuting Dong, Yuying Li, Le Jiao, Jian Liu, Sitong Zou, Xuejun Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models |
title | Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models |
title_full | Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models |
title_fullStr | Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models |
title_full_unstemmed | Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models |
title_short | Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models |
title_sort | toxicity rank order (tro) as a new approach for toxicity prediction by qsar models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9819504/ https://www.ncbi.nlm.nih.gov/pubmed/36613021 http://dx.doi.org/10.3390/ijerph20010701 |
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