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Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients

Age-related macular degeneration (AMD) is a common retina degenerative disease with a complex genetic and environmental background. This study aimed to determine the polygenic risk score (PRS) stratification between the AMD case and control patients. The PRS model was established on the targeted seq...

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Autores principales: Wąsowska, Anna, Teper, Sławomir, Matczyńska, Ewa, Łyszkiewicz, Przemysław, Sendecki, Adam, Machalińska, Anna, Wylęgała, Edward, Boguszewska-Chachulska, Anna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
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Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9821027/
https://www.ncbi.nlm.nih.gov/pubmed/36615095
http://dx.doi.org/10.3390/jcm12010295
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author Wąsowska, Anna
Teper, Sławomir
Matczyńska, Ewa
Łyszkiewicz, Przemysław
Sendecki, Adam
Machalińska, Anna
Wylęgała, Edward
Boguszewska-Chachulska, Anna
author_facet Wąsowska, Anna
Teper, Sławomir
Matczyńska, Ewa
Łyszkiewicz, Przemysław
Sendecki, Adam
Machalińska, Anna
Wylęgała, Edward
Boguszewska-Chachulska, Anna
author_sort Wąsowska, Anna
collection PubMed
description Age-related macular degeneration (AMD) is a common retina degenerative disease with a complex genetic and environmental background. This study aimed to determine the polygenic risk score (PRS) stratification between the AMD case and control patients. The PRS model was established on the targeted sequencing data of a cohort of 471 patients diagnosed with AMD and 167 healthy controls without symptoms of retinal degeneration. The highest predictive value to the target dataset was achieved for a 22-variant model with a p-value lower than threshold P(T) = 0.0123. The median PRS for cases was higher by 1.1 than for control samples (95% CI: (−1.19; −0.85)). The patients in the highest quantile had a significantly higher relative risk of developing AMD than those in the lowest reference quantile (OR = 35.13, 95% CI: (7.9; 156.1), p < 0.001). The diagnostic ability was investigated using ROC analysis with AUC = 0.76 (95% CI: (0.72; 0.80)). The polygenic susceptibility to AMD may be the starting point to expand AMD diagnostics based on rare highly penetrant variants and investigate associations with disease progression and treatment response in Polish patients in future studies.
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spelling pubmed-98210272023-01-07 Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients Wąsowska, Anna Teper, Sławomir Matczyńska, Ewa Łyszkiewicz, Przemysław Sendecki, Adam Machalińska, Anna Wylęgała, Edward Boguszewska-Chachulska, Anna J Clin Med Article Age-related macular degeneration (AMD) is a common retina degenerative disease with a complex genetic and environmental background. This study aimed to determine the polygenic risk score (PRS) stratification between the AMD case and control patients. The PRS model was established on the targeted sequencing data of a cohort of 471 patients diagnosed with AMD and 167 healthy controls without symptoms of retinal degeneration. The highest predictive value to the target dataset was achieved for a 22-variant model with a p-value lower than threshold P(T) = 0.0123. The median PRS for cases was higher by 1.1 than for control samples (95% CI: (−1.19; −0.85)). The patients in the highest quantile had a significantly higher relative risk of developing AMD than those in the lowest reference quantile (OR = 35.13, 95% CI: (7.9; 156.1), p < 0.001). The diagnostic ability was investigated using ROC analysis with AUC = 0.76 (95% CI: (0.72; 0.80)). The polygenic susceptibility to AMD may be the starting point to expand AMD diagnostics based on rare highly penetrant variants and investigate associations with disease progression and treatment response in Polish patients in future studies. MDPI 2022-12-30 /pmc/articles/PMC9821027/ /pubmed/36615095 http://dx.doi.org/10.3390/jcm12010295 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wąsowska, Anna
Teper, Sławomir
Matczyńska, Ewa
Łyszkiewicz, Przemysław
Sendecki, Adam
Machalińska, Anna
Wylęgała, Edward
Boguszewska-Chachulska, Anna
Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients
title Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients
title_full Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients
title_fullStr Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients
title_full_unstemmed Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients
title_short Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients
title_sort polygenic risk score impact on susceptibility to age-related macular degeneration in polish patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9821027/
https://www.ncbi.nlm.nih.gov/pubmed/36615095
http://dx.doi.org/10.3390/jcm12010295
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