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Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients
Age-related macular degeneration (AMD) is a common retina degenerative disease with a complex genetic and environmental background. This study aimed to determine the polygenic risk score (PRS) stratification between the AMD case and control patients. The PRS model was established on the targeted seq...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9821027/ https://www.ncbi.nlm.nih.gov/pubmed/36615095 http://dx.doi.org/10.3390/jcm12010295 |
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author | Wąsowska, Anna Teper, Sławomir Matczyńska, Ewa Łyszkiewicz, Przemysław Sendecki, Adam Machalińska, Anna Wylęgała, Edward Boguszewska-Chachulska, Anna |
author_facet | Wąsowska, Anna Teper, Sławomir Matczyńska, Ewa Łyszkiewicz, Przemysław Sendecki, Adam Machalińska, Anna Wylęgała, Edward Boguszewska-Chachulska, Anna |
author_sort | Wąsowska, Anna |
collection | PubMed |
description | Age-related macular degeneration (AMD) is a common retina degenerative disease with a complex genetic and environmental background. This study aimed to determine the polygenic risk score (PRS) stratification between the AMD case and control patients. The PRS model was established on the targeted sequencing data of a cohort of 471 patients diagnosed with AMD and 167 healthy controls without symptoms of retinal degeneration. The highest predictive value to the target dataset was achieved for a 22-variant model with a p-value lower than threshold P(T) = 0.0123. The median PRS for cases was higher by 1.1 than for control samples (95% CI: (−1.19; −0.85)). The patients in the highest quantile had a significantly higher relative risk of developing AMD than those in the lowest reference quantile (OR = 35.13, 95% CI: (7.9; 156.1), p < 0.001). The diagnostic ability was investigated using ROC analysis with AUC = 0.76 (95% CI: (0.72; 0.80)). The polygenic susceptibility to AMD may be the starting point to expand AMD diagnostics based on rare highly penetrant variants and investigate associations with disease progression and treatment response in Polish patients in future studies. |
format | Online Article Text |
id | pubmed-9821027 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-98210272023-01-07 Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients Wąsowska, Anna Teper, Sławomir Matczyńska, Ewa Łyszkiewicz, Przemysław Sendecki, Adam Machalińska, Anna Wylęgała, Edward Boguszewska-Chachulska, Anna J Clin Med Article Age-related macular degeneration (AMD) is a common retina degenerative disease with a complex genetic and environmental background. This study aimed to determine the polygenic risk score (PRS) stratification between the AMD case and control patients. The PRS model was established on the targeted sequencing data of a cohort of 471 patients diagnosed with AMD and 167 healthy controls without symptoms of retinal degeneration. The highest predictive value to the target dataset was achieved for a 22-variant model with a p-value lower than threshold P(T) = 0.0123. The median PRS for cases was higher by 1.1 than for control samples (95% CI: (−1.19; −0.85)). The patients in the highest quantile had a significantly higher relative risk of developing AMD than those in the lowest reference quantile (OR = 35.13, 95% CI: (7.9; 156.1), p < 0.001). The diagnostic ability was investigated using ROC analysis with AUC = 0.76 (95% CI: (0.72; 0.80)). The polygenic susceptibility to AMD may be the starting point to expand AMD diagnostics based on rare highly penetrant variants and investigate associations with disease progression and treatment response in Polish patients in future studies. MDPI 2022-12-30 /pmc/articles/PMC9821027/ /pubmed/36615095 http://dx.doi.org/10.3390/jcm12010295 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Wąsowska, Anna Teper, Sławomir Matczyńska, Ewa Łyszkiewicz, Przemysław Sendecki, Adam Machalińska, Anna Wylęgała, Edward Boguszewska-Chachulska, Anna Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients |
title | Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients |
title_full | Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients |
title_fullStr | Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients |
title_full_unstemmed | Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients |
title_short | Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients |
title_sort | polygenic risk score impact on susceptibility to age-related macular degeneration in polish patients |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9821027/ https://www.ncbi.nlm.nih.gov/pubmed/36615095 http://dx.doi.org/10.3390/jcm12010295 |
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