Cargando…

A deep network embedded with rough fuzzy discretization for OCT fundus image segmentation

The noise and redundant information are the main reasons for the performance bottleneck of medical image segmentation algorithms based on the deep learning. To this end, we propose a deep network embedded with rough fuzzy discretization (RFDDN) for OCT fundus image segmentation. Firstly, we establis...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Qiong, Zeng, Lirong, Lin, Cong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9822971/
https://www.ncbi.nlm.nih.gov/pubmed/36609585
http://dx.doi.org/10.1038/s41598-023-27479-6
_version_ 1784866054199050240
author Chen, Qiong
Zeng, Lirong
Lin, Cong
author_facet Chen, Qiong
Zeng, Lirong
Lin, Cong
author_sort Chen, Qiong
collection PubMed
description The noise and redundant information are the main reasons for the performance bottleneck of medical image segmentation algorithms based on the deep learning. To this end, we propose a deep network embedded with rough fuzzy discretization (RFDDN) for OCT fundus image segmentation. Firstly, we establish the information decision table of OCT fundus image segmentation, and regard each category of segmentation region as a fuzzy set. Then, we use the fuzzy c-means clustering to get the membership degrees of pixels to each segmentation region. According to membership functions and the equivalence relation generated by the brightness attribute, we design the individual fitness function based on the rough fuzzy set, and use a genetic algorithm to search for the best breakpoints to discretize the features of OCT fundus images. Finally, we take the feature discretization based on the rough fuzzy set as the pre-module of the deep neural network, and introduce the deep supervised attention mechanism to obtain the important multi-scale information. We compare RFDDN with U-Net, ReLayNet, CE-Net, MultiResUNet, and ISCLNet on the two groups of 3D retinal OCT data. RFDDN is superior to the other five methods on all evaluation indicators. The results obtained by ISCLNet are the second only inferior to those obtained by RFDDN. DSC, sensitivity, and specificity of RFDDN are evenly 3.3%, 2.6%, and 7.1% higher than those of ISCLNet, respectively. HD95 and ASD of RFDDN are evenly 6.6% and 19.7% lower than those of ISCLNet, respectively. The experimental results show that our method can effectively eliminate the noise and redundant information in Oct fundus images, and greatly improve the accuracy of OCT fundus image segmentation while taking into account the interpretability and computational efficiency.
format Online
Article
Text
id pubmed-9822971
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-98229712023-01-08 A deep network embedded with rough fuzzy discretization for OCT fundus image segmentation Chen, Qiong Zeng, Lirong Lin, Cong Sci Rep Article The noise and redundant information are the main reasons for the performance bottleneck of medical image segmentation algorithms based on the deep learning. To this end, we propose a deep network embedded with rough fuzzy discretization (RFDDN) for OCT fundus image segmentation. Firstly, we establish the information decision table of OCT fundus image segmentation, and regard each category of segmentation region as a fuzzy set. Then, we use the fuzzy c-means clustering to get the membership degrees of pixels to each segmentation region. According to membership functions and the equivalence relation generated by the brightness attribute, we design the individual fitness function based on the rough fuzzy set, and use a genetic algorithm to search for the best breakpoints to discretize the features of OCT fundus images. Finally, we take the feature discretization based on the rough fuzzy set as the pre-module of the deep neural network, and introduce the deep supervised attention mechanism to obtain the important multi-scale information. We compare RFDDN with U-Net, ReLayNet, CE-Net, MultiResUNet, and ISCLNet on the two groups of 3D retinal OCT data. RFDDN is superior to the other five methods on all evaluation indicators. The results obtained by ISCLNet are the second only inferior to those obtained by RFDDN. DSC, sensitivity, and specificity of RFDDN are evenly 3.3%, 2.6%, and 7.1% higher than those of ISCLNet, respectively. HD95 and ASD of RFDDN are evenly 6.6% and 19.7% lower than those of ISCLNet, respectively. The experimental results show that our method can effectively eliminate the noise and redundant information in Oct fundus images, and greatly improve the accuracy of OCT fundus image segmentation while taking into account the interpretability and computational efficiency. Nature Publishing Group UK 2023-01-06 /pmc/articles/PMC9822971/ /pubmed/36609585 http://dx.doi.org/10.1038/s41598-023-27479-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chen, Qiong
Zeng, Lirong
Lin, Cong
A deep network embedded with rough fuzzy discretization for OCT fundus image segmentation
title A deep network embedded with rough fuzzy discretization for OCT fundus image segmentation
title_full A deep network embedded with rough fuzzy discretization for OCT fundus image segmentation
title_fullStr A deep network embedded with rough fuzzy discretization for OCT fundus image segmentation
title_full_unstemmed A deep network embedded with rough fuzzy discretization for OCT fundus image segmentation
title_short A deep network embedded with rough fuzzy discretization for OCT fundus image segmentation
title_sort deep network embedded with rough fuzzy discretization for oct fundus image segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9822971/
https://www.ncbi.nlm.nih.gov/pubmed/36609585
http://dx.doi.org/10.1038/s41598-023-27479-6
work_keys_str_mv AT chenqiong adeepnetworkembeddedwithroughfuzzydiscretizationforoctfundusimagesegmentation
AT zenglirong adeepnetworkembeddedwithroughfuzzydiscretizationforoctfundusimagesegmentation
AT lincong adeepnetworkembeddedwithroughfuzzydiscretizationforoctfundusimagesegmentation
AT chenqiong deepnetworkembeddedwithroughfuzzydiscretizationforoctfundusimagesegmentation
AT zenglirong deepnetworkembeddedwithroughfuzzydiscretizationforoctfundusimagesegmentation
AT lincong deepnetworkembeddedwithroughfuzzydiscretizationforoctfundusimagesegmentation