Cargando…

Whole genome sequencing data of Chromobacterium amazonense BASUSDA_45 isolated from soil in Bangladesh capable of degrading pesticide

This article reports the Chromobacterium amazonense BASUSDA_45 strain's draft genomic sequence. The bacterium was isolated from cypermethrin pesticide contaminated soil and then the sequencing was carried out. Initially de novo assembly of the raw sequences, trimming and quality check generates...

Descripción completa

Detalles Bibliográficos
Autores principales: Rahman, Md Atikur, Sujon, Khaled Mahmud, Habib, Mohammad Tanbir, Forhad Hossain, Md., Ferdaus, K.M.K.B., Hoque, K.M.F., Ferdousi, Zennat, Reza, Md Abu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9823114/
https://www.ncbi.nlm.nih.gov/pubmed/36624760
http://dx.doi.org/10.1016/j.dib.2022.108853
_version_ 1784866085836685312
author Rahman, Md Atikur
Sujon, Khaled Mahmud
Habib, Mohammad Tanbir
Forhad Hossain, Md.
Ferdaus, K.M.K.B.
Hoque, K.M.F.
Ferdousi, Zennat
Reza, Md Abu
author_facet Rahman, Md Atikur
Sujon, Khaled Mahmud
Habib, Mohammad Tanbir
Forhad Hossain, Md.
Ferdaus, K.M.K.B.
Hoque, K.M.F.
Ferdousi, Zennat
Reza, Md Abu
author_sort Rahman, Md Atikur
collection PubMed
description This article reports the Chromobacterium amazonense BASUSDA_45 strain's draft genomic sequence. The bacterium was isolated from cypermethrin pesticide contaminated soil and then the sequencing was carried out. Initially de novo assembly of the raw sequences, trimming and quality check generates 125 contigs having N50 of 78,923. Further mapping of the contigs generated scaffolds. The genome contains 53 scaffolds with a total length of 4,295,151 bp having 62.30% GC content and N50 of 3,726,017. Annotation using Prokaryotic Genome Annotation Pipeline (PGAP) reveals 4181 genes among which 4096 were coding sequences, 76 tRNAs, 3 rRNAs, 4 noncoding RNAs. The raw sequence reads and annotated genome were uploaded to NCBI's Bioproject repository with the accession number PRJNA686506.
format Online
Article
Text
id pubmed-9823114
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-98231142023-01-08 Whole genome sequencing data of Chromobacterium amazonense BASUSDA_45 isolated from soil in Bangladesh capable of degrading pesticide Rahman, Md Atikur Sujon, Khaled Mahmud Habib, Mohammad Tanbir Forhad Hossain, Md. Ferdaus, K.M.K.B. Hoque, K.M.F. Ferdousi, Zennat Reza, Md Abu Data Brief Data Article This article reports the Chromobacterium amazonense BASUSDA_45 strain's draft genomic sequence. The bacterium was isolated from cypermethrin pesticide contaminated soil and then the sequencing was carried out. Initially de novo assembly of the raw sequences, trimming and quality check generates 125 contigs having N50 of 78,923. Further mapping of the contigs generated scaffolds. The genome contains 53 scaffolds with a total length of 4,295,151 bp having 62.30% GC content and N50 of 3,726,017. Annotation using Prokaryotic Genome Annotation Pipeline (PGAP) reveals 4181 genes among which 4096 were coding sequences, 76 tRNAs, 3 rRNAs, 4 noncoding RNAs. The raw sequence reads and annotated genome were uploaded to NCBI's Bioproject repository with the accession number PRJNA686506. Elsevier 2022-12-24 /pmc/articles/PMC9823114/ /pubmed/36624760 http://dx.doi.org/10.1016/j.dib.2022.108853 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Rahman, Md Atikur
Sujon, Khaled Mahmud
Habib, Mohammad Tanbir
Forhad Hossain, Md.
Ferdaus, K.M.K.B.
Hoque, K.M.F.
Ferdousi, Zennat
Reza, Md Abu
Whole genome sequencing data of Chromobacterium amazonense BASUSDA_45 isolated from soil in Bangladesh capable of degrading pesticide
title Whole genome sequencing data of Chromobacterium amazonense BASUSDA_45 isolated from soil in Bangladesh capable of degrading pesticide
title_full Whole genome sequencing data of Chromobacterium amazonense BASUSDA_45 isolated from soil in Bangladesh capable of degrading pesticide
title_fullStr Whole genome sequencing data of Chromobacterium amazonense BASUSDA_45 isolated from soil in Bangladesh capable of degrading pesticide
title_full_unstemmed Whole genome sequencing data of Chromobacterium amazonense BASUSDA_45 isolated from soil in Bangladesh capable of degrading pesticide
title_short Whole genome sequencing data of Chromobacterium amazonense BASUSDA_45 isolated from soil in Bangladesh capable of degrading pesticide
title_sort whole genome sequencing data of chromobacterium amazonense basusda_45 isolated from soil in bangladesh capable of degrading pesticide
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9823114/
https://www.ncbi.nlm.nih.gov/pubmed/36624760
http://dx.doi.org/10.1016/j.dib.2022.108853
work_keys_str_mv AT rahmanmdatikur wholegenomesequencingdataofchromobacteriumamazonensebasusda45isolatedfromsoilinbangladeshcapableofdegradingpesticide
AT sujonkhaledmahmud wholegenomesequencingdataofchromobacteriumamazonensebasusda45isolatedfromsoilinbangladeshcapableofdegradingpesticide
AT habibmohammadtanbir wholegenomesequencingdataofchromobacteriumamazonensebasusda45isolatedfromsoilinbangladeshcapableofdegradingpesticide
AT forhadhossainmd wholegenomesequencingdataofchromobacteriumamazonensebasusda45isolatedfromsoilinbangladeshcapableofdegradingpesticide
AT ferdauskmkb wholegenomesequencingdataofchromobacteriumamazonensebasusda45isolatedfromsoilinbangladeshcapableofdegradingpesticide
AT hoquekmf wholegenomesequencingdataofchromobacteriumamazonensebasusda45isolatedfromsoilinbangladeshcapableofdegradingpesticide
AT ferdousizennat wholegenomesequencingdataofchromobacteriumamazonensebasusda45isolatedfromsoilinbangladeshcapableofdegradingpesticide
AT rezamdabu wholegenomesequencingdataofchromobacteriumamazonensebasusda45isolatedfromsoilinbangladeshcapableofdegradingpesticide