Cargando…

Stratifying non-small cell lung cancer patients using an inverse of the treatment decision rules: validation using electronic health records with application to an administrative database

BACKGROUND: To validate a stratification method using an inverse of treatment decision rules that can classify non-small cell lung cancer (NSCLC) patients in real-world treatment records. METHODS: (1) To validate the index classifier against the TNM 7th edition, we analyzed electronic health records...

Descripción completa

Detalles Bibliográficos
Autores principales: Kim, Min-Hyung, Park, Sojung, Park, Yu Rang, Ji, Wonjun, Kim, Seul-Gi, Choo, Minji, Hwang, Seung-Sik, Lee, Jae Cheol, Kim, Hyeong Ryul, Choi, Chang-Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825000/
https://www.ncbi.nlm.nih.gov/pubmed/36609301
http://dx.doi.org/10.1186/s12911-022-02088-x
_version_ 1784866546071371776
author Kim, Min-Hyung
Park, Sojung
Park, Yu Rang
Ji, Wonjun
Kim, Seul-Gi
Choo, Minji
Hwang, Seung-Sik
Lee, Jae Cheol
Kim, Hyeong Ryul
Choi, Chang-Min
author_facet Kim, Min-Hyung
Park, Sojung
Park, Yu Rang
Ji, Wonjun
Kim, Seul-Gi
Choo, Minji
Hwang, Seung-Sik
Lee, Jae Cheol
Kim, Hyeong Ryul
Choi, Chang-Min
author_sort Kim, Min-Hyung
collection PubMed
description BACKGROUND: To validate a stratification method using an inverse of treatment decision rules that can classify non-small cell lung cancer (NSCLC) patients in real-world treatment records. METHODS: (1) To validate the index classifier against the TNM 7th edition, we analyzed electronic health records of NSCLC patients diagnosed from 2011 to 2015 in a tertiary referral hospital in Seoul, Korea. Predictive accuracy, stage-specific sensitivity, specificity, positive predictive value, negative predictive value, F1 score, and c-statistic were measured. (2) To apply the index classifier in an administrative database, we analyzed NSCLC patients in Korean National Health Insurance Database, 2002–2013. Differential survival rates among the classes were examined with the log-rank test, and class-specific survival rates were compared with the reference survival rates. RESULTS: (1) In the validation study (N = 1375), the overall accuracy was 93.8% (95% CI: 92.5–95.0%). Stage-specific c-statistic was the highest for stage I (0.97, 95% CI: 0.96–0.98) and the lowest for stage III (0.82, 95% CI: 0.77–0.87). (2) In the application study (N = 71,593), the index classifier showed a tendency for differentiating survival probabilities among classes. Compared to the reference TNM survival rates, the index classification under-estimated the survival probability for stages IA, IIIB, and IV, and over-estimated it for stages IIA and IIB. CONCLUSION: The inverse of the treatment decision rules has a potential to supplement a routinely collected database with information encoded in the treatment decision rules to classify NSCLC patients. It requires further validation and replication in multiple clinical settings. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12911-022-02088-x.
format Online
Article
Text
id pubmed-9825000
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-98250002023-01-08 Stratifying non-small cell lung cancer patients using an inverse of the treatment decision rules: validation using electronic health records with application to an administrative database Kim, Min-Hyung Park, Sojung Park, Yu Rang Ji, Wonjun Kim, Seul-Gi Choo, Minji Hwang, Seung-Sik Lee, Jae Cheol Kim, Hyeong Ryul Choi, Chang-Min BMC Med Inform Decis Mak Article BACKGROUND: To validate a stratification method using an inverse of treatment decision rules that can classify non-small cell lung cancer (NSCLC) patients in real-world treatment records. METHODS: (1) To validate the index classifier against the TNM 7th edition, we analyzed electronic health records of NSCLC patients diagnosed from 2011 to 2015 in a tertiary referral hospital in Seoul, Korea. Predictive accuracy, stage-specific sensitivity, specificity, positive predictive value, negative predictive value, F1 score, and c-statistic were measured. (2) To apply the index classifier in an administrative database, we analyzed NSCLC patients in Korean National Health Insurance Database, 2002–2013. Differential survival rates among the classes were examined with the log-rank test, and class-specific survival rates were compared with the reference survival rates. RESULTS: (1) In the validation study (N = 1375), the overall accuracy was 93.8% (95% CI: 92.5–95.0%). Stage-specific c-statistic was the highest for stage I (0.97, 95% CI: 0.96–0.98) and the lowest for stage III (0.82, 95% CI: 0.77–0.87). (2) In the application study (N = 71,593), the index classifier showed a tendency for differentiating survival probabilities among classes. Compared to the reference TNM survival rates, the index classification under-estimated the survival probability for stages IA, IIIB, and IV, and over-estimated it for stages IIA and IIB. CONCLUSION: The inverse of the treatment decision rules has a potential to supplement a routinely collected database with information encoded in the treatment decision rules to classify NSCLC patients. It requires further validation and replication in multiple clinical settings. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12911-022-02088-x. BioMed Central 2023-01-06 /pmc/articles/PMC9825000/ /pubmed/36609301 http://dx.doi.org/10.1186/s12911-022-02088-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Article
Kim, Min-Hyung
Park, Sojung
Park, Yu Rang
Ji, Wonjun
Kim, Seul-Gi
Choo, Minji
Hwang, Seung-Sik
Lee, Jae Cheol
Kim, Hyeong Ryul
Choi, Chang-Min
Stratifying non-small cell lung cancer patients using an inverse of the treatment decision rules: validation using electronic health records with application to an administrative database
title Stratifying non-small cell lung cancer patients using an inverse of the treatment decision rules: validation using electronic health records with application to an administrative database
title_full Stratifying non-small cell lung cancer patients using an inverse of the treatment decision rules: validation using electronic health records with application to an administrative database
title_fullStr Stratifying non-small cell lung cancer patients using an inverse of the treatment decision rules: validation using electronic health records with application to an administrative database
title_full_unstemmed Stratifying non-small cell lung cancer patients using an inverse of the treatment decision rules: validation using electronic health records with application to an administrative database
title_short Stratifying non-small cell lung cancer patients using an inverse of the treatment decision rules: validation using electronic health records with application to an administrative database
title_sort stratifying non-small cell lung cancer patients using an inverse of the treatment decision rules: validation using electronic health records with application to an administrative database
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825000/
https://www.ncbi.nlm.nih.gov/pubmed/36609301
http://dx.doi.org/10.1186/s12911-022-02088-x
work_keys_str_mv AT kimminhyung stratifyingnonsmallcelllungcancerpatientsusinganinverseofthetreatmentdecisionrulesvalidationusingelectronichealthrecordswithapplicationtoanadministrativedatabase
AT parksojung stratifyingnonsmallcelllungcancerpatientsusinganinverseofthetreatmentdecisionrulesvalidationusingelectronichealthrecordswithapplicationtoanadministrativedatabase
AT parkyurang stratifyingnonsmallcelllungcancerpatientsusinganinverseofthetreatmentdecisionrulesvalidationusingelectronichealthrecordswithapplicationtoanadministrativedatabase
AT jiwonjun stratifyingnonsmallcelllungcancerpatientsusinganinverseofthetreatmentdecisionrulesvalidationusingelectronichealthrecordswithapplicationtoanadministrativedatabase
AT kimseulgi stratifyingnonsmallcelllungcancerpatientsusinganinverseofthetreatmentdecisionrulesvalidationusingelectronichealthrecordswithapplicationtoanadministrativedatabase
AT choominji stratifyingnonsmallcelllungcancerpatientsusinganinverseofthetreatmentdecisionrulesvalidationusingelectronichealthrecordswithapplicationtoanadministrativedatabase
AT hwangseungsik stratifyingnonsmallcelllungcancerpatientsusinganinverseofthetreatmentdecisionrulesvalidationusingelectronichealthrecordswithapplicationtoanadministrativedatabase
AT leejaecheol stratifyingnonsmallcelllungcancerpatientsusinganinverseofthetreatmentdecisionrulesvalidationusingelectronichealthrecordswithapplicationtoanadministrativedatabase
AT kimhyeongryul stratifyingnonsmallcelllungcancerpatientsusinganinverseofthetreatmentdecisionrulesvalidationusingelectronichealthrecordswithapplicationtoanadministrativedatabase
AT choichangmin stratifyingnonsmallcelllungcancerpatientsusinganinverseofthetreatmentdecisionrulesvalidationusingelectronichealthrecordswithapplicationtoanadministrativedatabase