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igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV)
SUMMARY: igv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a single line of code and has no external dependencies. The viewer runs completely in the web browser, with no backend server and no data pre-processin...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825295/ https://www.ncbi.nlm.nih.gov/pubmed/36562559 http://dx.doi.org/10.1093/bioinformatics/btac830 |
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author | Robinson, James T Thorvaldsdottir, Helga Turner, Douglass Mesirov, Jill P |
author_facet | Robinson, James T Thorvaldsdottir, Helga Turner, Douglass Mesirov, Jill P |
author_sort | Robinson, James T |
collection | PubMed |
description | SUMMARY: igv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a single line of code and has no external dependencies. The viewer runs completely in the web browser, with no backend server and no data pre-processing required. AVAILABILITY AND IMPLEMENTATION: The igv.js JavaScript component can be installed from NPM at https://www.npmjs.com/package/igv. The source code is available at https://github.com/igvteam/igv.js under the MIT open-source license. IGV-Web, the end-user application built around igv.js, is available at https://igv.org/app. The source code is available at https://github.com/igvteam/igv-webapp under the MIT open-source license. SUPPLEMENTARY INFORMATION: Supplementary information is available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-9825295 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-98252952023-01-10 igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV) Robinson, James T Thorvaldsdottir, Helga Turner, Douglass Mesirov, Jill P Bioinformatics Applications Note SUMMARY: igv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a single line of code and has no external dependencies. The viewer runs completely in the web browser, with no backend server and no data pre-processing required. AVAILABILITY AND IMPLEMENTATION: The igv.js JavaScript component can be installed from NPM at https://www.npmjs.com/package/igv. The source code is available at https://github.com/igvteam/igv.js under the MIT open-source license. IGV-Web, the end-user application built around igv.js, is available at https://igv.org/app. The source code is available at https://github.com/igvteam/igv-webapp under the MIT open-source license. SUPPLEMENTARY INFORMATION: Supplementary information is available at Bioinformatics online. Oxford University Press 2022-12-23 /pmc/articles/PMC9825295/ /pubmed/36562559 http://dx.doi.org/10.1093/bioinformatics/btac830 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Note Robinson, James T Thorvaldsdottir, Helga Turner, Douglass Mesirov, Jill P igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV) |
title | igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV) |
title_full | igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV) |
title_fullStr | igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV) |
title_full_unstemmed | igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV) |
title_short | igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV) |
title_sort | igv.js: an embeddable javascript implementation of the integrative genomics viewer (igv) |
topic | Applications Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825295/ https://www.ncbi.nlm.nih.gov/pubmed/36562559 http://dx.doi.org/10.1093/bioinformatics/btac830 |
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