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snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs
snoDB is an interactive database of human small nucleolar RNAs (snoRNAs) that includes up-to-date information on snoRNA features, genomic location, conservation, host gene, snoRNA–RNA targets and snoRNA abundance and provides links to other resources. In the second edition of this database (snoDB 2....
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825428/ https://www.ncbi.nlm.nih.gov/pubmed/36165892 http://dx.doi.org/10.1093/nar/gkac835 |
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author | Bergeron, Danny Paraqindes, Hermes Fafard-Couture, Étienne Deschamps-Francoeur, Gabrielle Faucher-Giguère, Laurence Bouchard-Bourelle, Philia Abou Elela, Sherif Catez, Frédéric Marcel, Virginie Scott, Michelle S |
author_facet | Bergeron, Danny Paraqindes, Hermes Fafard-Couture, Étienne Deschamps-Francoeur, Gabrielle Faucher-Giguère, Laurence Bouchard-Bourelle, Philia Abou Elela, Sherif Catez, Frédéric Marcel, Virginie Scott, Michelle S |
author_sort | Bergeron, Danny |
collection | PubMed |
description | snoDB is an interactive database of human small nucleolar RNAs (snoRNAs) that includes up-to-date information on snoRNA features, genomic location, conservation, host gene, snoRNA–RNA targets and snoRNA abundance and provides links to other resources. In the second edition of this database (snoDB 2.0), we added an entirely new section on ribosomal RNA (rRNA) chemical modifications guided by snoRNAs with easy navigation between the different rRNA versions used in the literature and experimentally measured levels of modification. We also included new layers of information, including snoRNA motifs, secondary structure prediction, snoRNA–protein interactions, copy annotations and low structure bias expression data in a wide panel of tissues and cell lines to bolster functional probing of snoRNA biology. Version 2.0 features updated identifiers, more links to external resources and duplicate entry resolution. As a result, snoDB 2.0, which is freely available at https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/, represents a one-stop shop for snoRNA features, rRNA modification targets, functional impact and potential regulators. |
format | Online Article Text |
id | pubmed-9825428 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-98254282023-01-10 snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs Bergeron, Danny Paraqindes, Hermes Fafard-Couture, Étienne Deschamps-Francoeur, Gabrielle Faucher-Giguère, Laurence Bouchard-Bourelle, Philia Abou Elela, Sherif Catez, Frédéric Marcel, Virginie Scott, Michelle S Nucleic Acids Res Database Issue snoDB is an interactive database of human small nucleolar RNAs (snoRNAs) that includes up-to-date information on snoRNA features, genomic location, conservation, host gene, snoRNA–RNA targets and snoRNA abundance and provides links to other resources. In the second edition of this database (snoDB 2.0), we added an entirely new section on ribosomal RNA (rRNA) chemical modifications guided by snoRNAs with easy navigation between the different rRNA versions used in the literature and experimentally measured levels of modification. We also included new layers of information, including snoRNA motifs, secondary structure prediction, snoRNA–protein interactions, copy annotations and low structure bias expression data in a wide panel of tissues and cell lines to bolster functional probing of snoRNA biology. Version 2.0 features updated identifiers, more links to external resources and duplicate entry resolution. As a result, snoDB 2.0, which is freely available at https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/, represents a one-stop shop for snoRNA features, rRNA modification targets, functional impact and potential regulators. Oxford University Press 2022-09-27 /pmc/articles/PMC9825428/ /pubmed/36165892 http://dx.doi.org/10.1093/nar/gkac835 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Bergeron, Danny Paraqindes, Hermes Fafard-Couture, Étienne Deschamps-Francoeur, Gabrielle Faucher-Giguère, Laurence Bouchard-Bourelle, Philia Abou Elela, Sherif Catez, Frédéric Marcel, Virginie Scott, Michelle S snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs |
title | snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs |
title_full | snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs |
title_fullStr | snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs |
title_full_unstemmed | snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs |
title_short | snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs |
title_sort | snodb 2.0: an enhanced interactive database, specializing in human snornas |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825428/ https://www.ncbi.nlm.nih.gov/pubmed/36165892 http://dx.doi.org/10.1093/nar/gkac835 |
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