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snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs

snoDB is an interactive database of human small nucleolar RNAs (snoRNAs) that includes up-to-date information on snoRNA features, genomic location, conservation, host gene, snoRNA–RNA targets and snoRNA abundance and provides links to other resources. In the second edition of this database (snoDB 2....

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Autores principales: Bergeron, Danny, Paraqindes, Hermes, Fafard-Couture, Étienne, Deschamps-Francoeur, Gabrielle, Faucher-Giguère, Laurence, Bouchard-Bourelle, Philia, Abou Elela, Sherif, Catez, Frédéric, Marcel, Virginie, Scott, Michelle S
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825428/
https://www.ncbi.nlm.nih.gov/pubmed/36165892
http://dx.doi.org/10.1093/nar/gkac835
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author Bergeron, Danny
Paraqindes, Hermes
Fafard-Couture, Étienne
Deschamps-Francoeur, Gabrielle
Faucher-Giguère, Laurence
Bouchard-Bourelle, Philia
Abou Elela, Sherif
Catez, Frédéric
Marcel, Virginie
Scott, Michelle S
author_facet Bergeron, Danny
Paraqindes, Hermes
Fafard-Couture, Étienne
Deschamps-Francoeur, Gabrielle
Faucher-Giguère, Laurence
Bouchard-Bourelle, Philia
Abou Elela, Sherif
Catez, Frédéric
Marcel, Virginie
Scott, Michelle S
author_sort Bergeron, Danny
collection PubMed
description snoDB is an interactive database of human small nucleolar RNAs (snoRNAs) that includes up-to-date information on snoRNA features, genomic location, conservation, host gene, snoRNA–RNA targets and snoRNA abundance and provides links to other resources. In the second edition of this database (snoDB 2.0), we added an entirely new section on ribosomal RNA (rRNA) chemical modifications guided by snoRNAs with easy navigation between the different rRNA versions used in the literature and experimentally measured levels of modification. We also included new layers of information, including snoRNA motifs, secondary structure prediction, snoRNA–protein interactions, copy annotations and low structure bias expression data in a wide panel of tissues and cell lines to bolster functional probing of snoRNA biology. Version 2.0 features updated identifiers, more links to external resources and duplicate entry resolution. As a result, snoDB 2.0, which is freely available at https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/, represents a one-stop shop for snoRNA features, rRNA modification targets, functional impact and potential regulators.
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spelling pubmed-98254282023-01-10 snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs Bergeron, Danny Paraqindes, Hermes Fafard-Couture, Étienne Deschamps-Francoeur, Gabrielle Faucher-Giguère, Laurence Bouchard-Bourelle, Philia Abou Elela, Sherif Catez, Frédéric Marcel, Virginie Scott, Michelle S Nucleic Acids Res Database Issue snoDB is an interactive database of human small nucleolar RNAs (snoRNAs) that includes up-to-date information on snoRNA features, genomic location, conservation, host gene, snoRNA–RNA targets and snoRNA abundance and provides links to other resources. In the second edition of this database (snoDB 2.0), we added an entirely new section on ribosomal RNA (rRNA) chemical modifications guided by snoRNAs with easy navigation between the different rRNA versions used in the literature and experimentally measured levels of modification. We also included new layers of information, including snoRNA motifs, secondary structure prediction, snoRNA–protein interactions, copy annotations and low structure bias expression data in a wide panel of tissues and cell lines to bolster functional probing of snoRNA biology. Version 2.0 features updated identifiers, more links to external resources and duplicate entry resolution. As a result, snoDB 2.0, which is freely available at https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/, represents a one-stop shop for snoRNA features, rRNA modification targets, functional impact and potential regulators. Oxford University Press 2022-09-27 /pmc/articles/PMC9825428/ /pubmed/36165892 http://dx.doi.org/10.1093/nar/gkac835 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Bergeron, Danny
Paraqindes, Hermes
Fafard-Couture, Étienne
Deschamps-Francoeur, Gabrielle
Faucher-Giguère, Laurence
Bouchard-Bourelle, Philia
Abou Elela, Sherif
Catez, Frédéric
Marcel, Virginie
Scott, Michelle S
snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs
title snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs
title_full snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs
title_fullStr snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs
title_full_unstemmed snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs
title_short snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs
title_sort snodb 2.0: an enhanced interactive database, specializing in human snornas
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825428/
https://www.ncbi.nlm.nih.gov/pubmed/36165892
http://dx.doi.org/10.1093/nar/gkac835
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