Cargando…

REBASE: a database for DNA restriction and modification: enzymes, genes and genomes

REBASE is a comprehensive and extensively curated database of information about the components of restriction-modification (RM) systems. It is fully referenced and provides information about the recognition and cleavage sites for both restriction enzymes and DNA methyltransferases together with thei...

Descripción completa

Detalles Bibliográficos
Autores principales: Roberts, Richard J, Vincze, Tamas, Posfai, Janos, Macelis, Dana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825431/
https://www.ncbi.nlm.nih.gov/pubmed/36318248
http://dx.doi.org/10.1093/nar/gkac975
_version_ 1784866629621907456
author Roberts, Richard J
Vincze, Tamas
Posfai, Janos
Macelis, Dana
author_facet Roberts, Richard J
Vincze, Tamas
Posfai, Janos
Macelis, Dana
author_sort Roberts, Richard J
collection PubMed
description REBASE is a comprehensive and extensively curated database of information about the components of restriction-modification (RM) systems. It is fully referenced and provides information about the recognition and cleavage sites for both restriction enzymes and DNA methyltransferases together with their commercial availability, methylation sensitivity, crystal and sequence data. All completely sequenced genomes and select shotgun sequences are analyzed for RM system components. When PacBio sequence data is available, the recognition sequences of many DNA methyltransferases (MTases) can be determined. This has led to an explosive growth in the number of well-characterized MTases in REBASE. The contents of REBASE may be browsed from the web rebase.neb.com and selected compilations can be downloaded by FTP (ftp.neb.com). Monthly updates are also available via email.
format Online
Article
Text
id pubmed-9825431
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-98254312023-01-10 REBASE: a database for DNA restriction and modification: enzymes, genes and genomes Roberts, Richard J Vincze, Tamas Posfai, Janos Macelis, Dana Nucleic Acids Res Database Issue REBASE is a comprehensive and extensively curated database of information about the components of restriction-modification (RM) systems. It is fully referenced and provides information about the recognition and cleavage sites for both restriction enzymes and DNA methyltransferases together with their commercial availability, methylation sensitivity, crystal and sequence data. All completely sequenced genomes and select shotgun sequences are analyzed for RM system components. When PacBio sequence data is available, the recognition sequences of many DNA methyltransferases (MTases) can be determined. This has led to an explosive growth in the number of well-characterized MTases in REBASE. The contents of REBASE may be browsed from the web rebase.neb.com and selected compilations can be downloaded by FTP (ftp.neb.com). Monthly updates are also available via email. Oxford University Press 2022-11-01 /pmc/articles/PMC9825431/ /pubmed/36318248 http://dx.doi.org/10.1093/nar/gkac975 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Roberts, Richard J
Vincze, Tamas
Posfai, Janos
Macelis, Dana
REBASE: a database for DNA restriction and modification: enzymes, genes and genomes
title REBASE: a database for DNA restriction and modification: enzymes, genes and genomes
title_full REBASE: a database for DNA restriction and modification: enzymes, genes and genomes
title_fullStr REBASE: a database for DNA restriction and modification: enzymes, genes and genomes
title_full_unstemmed REBASE: a database for DNA restriction and modification: enzymes, genes and genomes
title_short REBASE: a database for DNA restriction and modification: enzymes, genes and genomes
title_sort rebase: a database for dna restriction and modification: enzymes, genes and genomes
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825431/
https://www.ncbi.nlm.nih.gov/pubmed/36318248
http://dx.doi.org/10.1093/nar/gkac975
work_keys_str_mv AT robertsrichardj rebaseadatabasefordnarestrictionandmodificationenzymesgenesandgenomes
AT vinczetamas rebaseadatabasefordnarestrictionandmodificationenzymesgenesandgenomes
AT posfaijanos rebaseadatabasefordnarestrictionandmodificationenzymesgenesandgenomes
AT macelisdana rebaseadatabasefordnarestrictionandmodificationenzymesgenesandgenomes