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REBASE: a database for DNA restriction and modification: enzymes, genes and genomes
REBASE is a comprehensive and extensively curated database of information about the components of restriction-modification (RM) systems. It is fully referenced and provides information about the recognition and cleavage sites for both restriction enzymes and DNA methyltransferases together with thei...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825431/ https://www.ncbi.nlm.nih.gov/pubmed/36318248 http://dx.doi.org/10.1093/nar/gkac975 |
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author | Roberts, Richard J Vincze, Tamas Posfai, Janos Macelis, Dana |
author_facet | Roberts, Richard J Vincze, Tamas Posfai, Janos Macelis, Dana |
author_sort | Roberts, Richard J |
collection | PubMed |
description | REBASE is a comprehensive and extensively curated database of information about the components of restriction-modification (RM) systems. It is fully referenced and provides information about the recognition and cleavage sites for both restriction enzymes and DNA methyltransferases together with their commercial availability, methylation sensitivity, crystal and sequence data. All completely sequenced genomes and select shotgun sequences are analyzed for RM system components. When PacBio sequence data is available, the recognition sequences of many DNA methyltransferases (MTases) can be determined. This has led to an explosive growth in the number of well-characterized MTases in REBASE. The contents of REBASE may be browsed from the web rebase.neb.com and selected compilations can be downloaded by FTP (ftp.neb.com). Monthly updates are also available via email. |
format | Online Article Text |
id | pubmed-9825431 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-98254312023-01-10 REBASE: a database for DNA restriction and modification: enzymes, genes and genomes Roberts, Richard J Vincze, Tamas Posfai, Janos Macelis, Dana Nucleic Acids Res Database Issue REBASE is a comprehensive and extensively curated database of information about the components of restriction-modification (RM) systems. It is fully referenced and provides information about the recognition and cleavage sites for both restriction enzymes and DNA methyltransferases together with their commercial availability, methylation sensitivity, crystal and sequence data. All completely sequenced genomes and select shotgun sequences are analyzed for RM system components. When PacBio sequence data is available, the recognition sequences of many DNA methyltransferases (MTases) can be determined. This has led to an explosive growth in the number of well-characterized MTases in REBASE. The contents of REBASE may be browsed from the web rebase.neb.com and selected compilations can be downloaded by FTP (ftp.neb.com). Monthly updates are also available via email. Oxford University Press 2022-11-01 /pmc/articles/PMC9825431/ /pubmed/36318248 http://dx.doi.org/10.1093/nar/gkac975 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Roberts, Richard J Vincze, Tamas Posfai, Janos Macelis, Dana REBASE: a database for DNA restriction and modification: enzymes, genes and genomes |
title | REBASE: a database for DNA restriction and modification: enzymes, genes and genomes |
title_full | REBASE: a database for DNA restriction and modification: enzymes, genes and genomes |
title_fullStr | REBASE: a database for DNA restriction and modification: enzymes, genes and genomes |
title_full_unstemmed | REBASE: a database for DNA restriction and modification: enzymes, genes and genomes |
title_short | REBASE: a database for DNA restriction and modification: enzymes, genes and genomes |
title_sort | rebase: a database for dna restriction and modification: enzymes, genes and genomes |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825431/ https://www.ncbi.nlm.nih.gov/pubmed/36318248 http://dx.doi.org/10.1093/nar/gkac975 |
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