Cargando…
Ribocentre: a database of ribozymes
Ribozymes are excellent systems in which to study ‘sequence - structure - function’ relationships in RNA molecules. Understanding these relationships may greatly help structural modeling and design of functional RNA structures and some functional structural modules could be repurposed in molecular d...
Autores principales: | , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825448/ https://www.ncbi.nlm.nih.gov/pubmed/36177882 http://dx.doi.org/10.1093/nar/gkac840 |
_version_ | 1784866633571893248 |
---|---|
author | Deng, Jie Shi, Yaohuang Peng, Xuemei He, Yuanlin Chen, Xiaoxue Li, Mengxiao Lin, Xiaowei Liao, Wenjian Huang, Yuanyin Jiang, Taijiao Lilley, David M J Miao, Zhichao Huang, Lin |
author_facet | Deng, Jie Shi, Yaohuang Peng, Xuemei He, Yuanlin Chen, Xiaoxue Li, Mengxiao Lin, Xiaowei Liao, Wenjian Huang, Yuanyin Jiang, Taijiao Lilley, David M J Miao, Zhichao Huang, Lin |
author_sort | Deng, Jie |
collection | PubMed |
description | Ribozymes are excellent systems in which to study ‘sequence - structure - function’ relationships in RNA molecules. Understanding these relationships may greatly help structural modeling and design of functional RNA structures and some functional structural modules could be repurposed in molecular design. At present, there is no comprehensive database summarising all the natural ribozyme families. We have therefore created Ribocentre, a database that collects together sequence, structure and mechanistic data on 21 ribozyme families. This includes available information on timelines, sequence families, secondary and tertiary structures, catalytic mechanisms, applications of the ribozymes together with key publications. The database is publicly available at https://www.ribocentre.org. |
format | Online Article Text |
id | pubmed-9825448 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-98254482023-01-10 Ribocentre: a database of ribozymes Deng, Jie Shi, Yaohuang Peng, Xuemei He, Yuanlin Chen, Xiaoxue Li, Mengxiao Lin, Xiaowei Liao, Wenjian Huang, Yuanyin Jiang, Taijiao Lilley, David M J Miao, Zhichao Huang, Lin Nucleic Acids Res Database Issue Ribozymes are excellent systems in which to study ‘sequence - structure - function’ relationships in RNA molecules. Understanding these relationships may greatly help structural modeling and design of functional RNA structures and some functional structural modules could be repurposed in molecular design. At present, there is no comprehensive database summarising all the natural ribozyme families. We have therefore created Ribocentre, a database that collects together sequence, structure and mechanistic data on 21 ribozyme families. This includes available information on timelines, sequence families, secondary and tertiary structures, catalytic mechanisms, applications of the ribozymes together with key publications. The database is publicly available at https://www.ribocentre.org. Oxford University Press 2022-09-30 /pmc/articles/PMC9825448/ /pubmed/36177882 http://dx.doi.org/10.1093/nar/gkac840 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Deng, Jie Shi, Yaohuang Peng, Xuemei He, Yuanlin Chen, Xiaoxue Li, Mengxiao Lin, Xiaowei Liao, Wenjian Huang, Yuanyin Jiang, Taijiao Lilley, David M J Miao, Zhichao Huang, Lin Ribocentre: a database of ribozymes |
title | Ribocentre: a database of ribozymes |
title_full | Ribocentre: a database of ribozymes |
title_fullStr | Ribocentre: a database of ribozymes |
title_full_unstemmed | Ribocentre: a database of ribozymes |
title_short | Ribocentre: a database of ribozymes |
title_sort | ribocentre: a database of ribozymes |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825448/ https://www.ncbi.nlm.nih.gov/pubmed/36177882 http://dx.doi.org/10.1093/nar/gkac840 |
work_keys_str_mv | AT dengjie ribocentreadatabaseofribozymes AT shiyaohuang ribocentreadatabaseofribozymes AT pengxuemei ribocentreadatabaseofribozymes AT heyuanlin ribocentreadatabaseofribozymes AT chenxiaoxue ribocentreadatabaseofribozymes AT limengxiao ribocentreadatabaseofribozymes AT linxiaowei ribocentreadatabaseofribozymes AT liaowenjian ribocentreadatabaseofribozymes AT huangyuanyin ribocentreadatabaseofribozymes AT jiangtaijiao ribocentreadatabaseofribozymes AT lilleydavidmj ribocentreadatabaseofribozymes AT miaozhichao ribocentreadatabaseofribozymes AT huanglin ribocentreadatabaseofribozymes |