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Ribocentre: a database of ribozymes

Ribozymes are excellent systems in which to study ‘sequence - structure - function’ relationships in RNA molecules. Understanding these relationships may greatly help structural modeling and design of functional RNA structures and some functional structural modules could be repurposed in molecular d...

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Autores principales: Deng, Jie, Shi, Yaohuang, Peng, Xuemei, He, Yuanlin, Chen, Xiaoxue, Li, Mengxiao, Lin, Xiaowei, Liao, Wenjian, Huang, Yuanyin, Jiang, Taijiao, Lilley, David M J, Miao, Zhichao, Huang, Lin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825448/
https://www.ncbi.nlm.nih.gov/pubmed/36177882
http://dx.doi.org/10.1093/nar/gkac840
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author Deng, Jie
Shi, Yaohuang
Peng, Xuemei
He, Yuanlin
Chen, Xiaoxue
Li, Mengxiao
Lin, Xiaowei
Liao, Wenjian
Huang, Yuanyin
Jiang, Taijiao
Lilley, David M J
Miao, Zhichao
Huang, Lin
author_facet Deng, Jie
Shi, Yaohuang
Peng, Xuemei
He, Yuanlin
Chen, Xiaoxue
Li, Mengxiao
Lin, Xiaowei
Liao, Wenjian
Huang, Yuanyin
Jiang, Taijiao
Lilley, David M J
Miao, Zhichao
Huang, Lin
author_sort Deng, Jie
collection PubMed
description Ribozymes are excellent systems in which to study ‘sequence - structure - function’ relationships in RNA molecules. Understanding these relationships may greatly help structural modeling and design of functional RNA structures and some functional structural modules could be repurposed in molecular design. At present, there is no comprehensive database summarising all the natural ribozyme families. We have therefore created Ribocentre, a database that collects together sequence, structure and mechanistic data on 21 ribozyme families. This includes available information on timelines, sequence families, secondary and tertiary structures, catalytic mechanisms, applications of the ribozymes together with key publications. The database is publicly available at https://www.ribocentre.org.
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spelling pubmed-98254482023-01-10 Ribocentre: a database of ribozymes Deng, Jie Shi, Yaohuang Peng, Xuemei He, Yuanlin Chen, Xiaoxue Li, Mengxiao Lin, Xiaowei Liao, Wenjian Huang, Yuanyin Jiang, Taijiao Lilley, David M J Miao, Zhichao Huang, Lin Nucleic Acids Res Database Issue Ribozymes are excellent systems in which to study ‘sequence - structure - function’ relationships in RNA molecules. Understanding these relationships may greatly help structural modeling and design of functional RNA structures and some functional structural modules could be repurposed in molecular design. At present, there is no comprehensive database summarising all the natural ribozyme families. We have therefore created Ribocentre, a database that collects together sequence, structure and mechanistic data on 21 ribozyme families. This includes available information on timelines, sequence families, secondary and tertiary structures, catalytic mechanisms, applications of the ribozymes together with key publications. The database is publicly available at https://www.ribocentre.org. Oxford University Press 2022-09-30 /pmc/articles/PMC9825448/ /pubmed/36177882 http://dx.doi.org/10.1093/nar/gkac840 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Deng, Jie
Shi, Yaohuang
Peng, Xuemei
He, Yuanlin
Chen, Xiaoxue
Li, Mengxiao
Lin, Xiaowei
Liao, Wenjian
Huang, Yuanyin
Jiang, Taijiao
Lilley, David M J
Miao, Zhichao
Huang, Lin
Ribocentre: a database of ribozymes
title Ribocentre: a database of ribozymes
title_full Ribocentre: a database of ribozymes
title_fullStr Ribocentre: a database of ribozymes
title_full_unstemmed Ribocentre: a database of ribozymes
title_short Ribocentre: a database of ribozymes
title_sort ribocentre: a database of ribozymes
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825448/
https://www.ncbi.nlm.nih.gov/pubmed/36177882
http://dx.doi.org/10.1093/nar/gkac840
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