Cargando…
InterPro in 2022
The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. Here, we report recent developments with InterPro (version 90.0) and its associated software, includin...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825450/ https://www.ncbi.nlm.nih.gov/pubmed/36350672 http://dx.doi.org/10.1093/nar/gkac993 |
_version_ | 1784866633803628544 |
---|---|
author | Paysan-Lafosse, Typhaine Blum, Matthias Chuguransky, Sara Grego, Tiago Pinto, Beatriz Lázaro Salazar, Gustavo A Bileschi, Maxwell L Bork, Peer Bridge, Alan Colwell, Lucy Gough, Julian Haft, Daniel H Letunić, Ivica Marchler-Bauer, Aron Mi, Huaiyu Natale, Darren A Orengo, Christine A Pandurangan, Arun P Rivoire, Catherine Sigrist, Christian J A Sillitoe, Ian Thanki, Narmada Thomas, Paul D Tosatto, Silvio C E Wu, Cathy H Bateman, Alex |
author_facet | Paysan-Lafosse, Typhaine Blum, Matthias Chuguransky, Sara Grego, Tiago Pinto, Beatriz Lázaro Salazar, Gustavo A Bileschi, Maxwell L Bork, Peer Bridge, Alan Colwell, Lucy Gough, Julian Haft, Daniel H Letunić, Ivica Marchler-Bauer, Aron Mi, Huaiyu Natale, Darren A Orengo, Christine A Pandurangan, Arun P Rivoire, Catherine Sigrist, Christian J A Sillitoe, Ian Thanki, Narmada Thomas, Paul D Tosatto, Silvio C E Wu, Cathy H Bateman, Alex |
author_sort | Paysan-Lafosse, Typhaine |
collection | PubMed |
description | The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. Here, we report recent developments with InterPro (version 90.0) and its associated software, including updates to data content and to the website. These developments extend and enrich the information provided by InterPro, and provide a more user friendly access to the data. Additionally, we have worked on adding Pfam website features to the InterPro website, as the Pfam website will be retired in late 2022. We also show that InterPro's sequence coverage has kept pace with the growth of UniProtKB. Moreover, we report the development of a card game as a method of engaging the non-scientific community. Finally, we discuss the benefits and challenges brought by the use of artificial intelligence for protein structure prediction. |
format | Online Article Text |
id | pubmed-9825450 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-98254502023-01-10 InterPro in 2022 Paysan-Lafosse, Typhaine Blum, Matthias Chuguransky, Sara Grego, Tiago Pinto, Beatriz Lázaro Salazar, Gustavo A Bileschi, Maxwell L Bork, Peer Bridge, Alan Colwell, Lucy Gough, Julian Haft, Daniel H Letunić, Ivica Marchler-Bauer, Aron Mi, Huaiyu Natale, Darren A Orengo, Christine A Pandurangan, Arun P Rivoire, Catherine Sigrist, Christian J A Sillitoe, Ian Thanki, Narmada Thomas, Paul D Tosatto, Silvio C E Wu, Cathy H Bateman, Alex Nucleic Acids Res Database Issue The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. Here, we report recent developments with InterPro (version 90.0) and its associated software, including updates to data content and to the website. These developments extend and enrich the information provided by InterPro, and provide a more user friendly access to the data. Additionally, we have worked on adding Pfam website features to the InterPro website, as the Pfam website will be retired in late 2022. We also show that InterPro's sequence coverage has kept pace with the growth of UniProtKB. Moreover, we report the development of a card game as a method of engaging the non-scientific community. Finally, we discuss the benefits and challenges brought by the use of artificial intelligence for protein structure prediction. Oxford University Press 2022-11-09 /pmc/articles/PMC9825450/ /pubmed/36350672 http://dx.doi.org/10.1093/nar/gkac993 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Paysan-Lafosse, Typhaine Blum, Matthias Chuguransky, Sara Grego, Tiago Pinto, Beatriz Lázaro Salazar, Gustavo A Bileschi, Maxwell L Bork, Peer Bridge, Alan Colwell, Lucy Gough, Julian Haft, Daniel H Letunić, Ivica Marchler-Bauer, Aron Mi, Huaiyu Natale, Darren A Orengo, Christine A Pandurangan, Arun P Rivoire, Catherine Sigrist, Christian J A Sillitoe, Ian Thanki, Narmada Thomas, Paul D Tosatto, Silvio C E Wu, Cathy H Bateman, Alex InterPro in 2022 |
title | InterPro in 2022 |
title_full | InterPro in 2022 |
title_fullStr | InterPro in 2022 |
title_full_unstemmed | InterPro in 2022 |
title_short | InterPro in 2022 |
title_sort | interpro in 2022 |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825450/ https://www.ncbi.nlm.nih.gov/pubmed/36350672 http://dx.doi.org/10.1093/nar/gkac993 |
work_keys_str_mv | AT paysanlafossetyphaine interproin2022 AT blummatthias interproin2022 AT chuguranskysara interproin2022 AT gregotiago interproin2022 AT pintobeatrizlazaro interproin2022 AT salazargustavoa interproin2022 AT bileschimaxwelll interproin2022 AT borkpeer interproin2022 AT bridgealan interproin2022 AT colwelllucy interproin2022 AT goughjulian interproin2022 AT haftdanielh interproin2022 AT letunicivica interproin2022 AT marchlerbaueraron interproin2022 AT mihuaiyu interproin2022 AT nataledarrena interproin2022 AT orengochristinea interproin2022 AT panduranganarunp interproin2022 AT rivoirecatherine interproin2022 AT sigristchristianja interproin2022 AT sillitoeian interproin2022 AT thankinarmada interproin2022 AT thomaspauld interproin2022 AT tosattosilvioce interproin2022 AT wucathyh interproin2022 AT batemanalex interproin2022 |