Cargando…

DrugMAP: molecular atlas and pharma-information of all drugs

The efficacy and safety of drugs are widely known to be determined by their interactions with multiple molecules of pharmacological importance, and it is therefore essential to systematically depict the molecular atlas and pharma-information of studied drugs. However, our understanding of such infor...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Fengcheng, Yin, Jiayi, Lu, Mingkun, Mou, Minjie, Li, Zhaorong, Zeng, Zhenyu, Tan, Ying, Wang, Shanshan, Chu, Xinyi, Dai, Haibin, Hou, Tingjun, Zeng, Su, Chen, Yuzong, Zhu, Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825453/
https://www.ncbi.nlm.nih.gov/pubmed/36243961
http://dx.doi.org/10.1093/nar/gkac813
_version_ 1784866634543923200
author Li, Fengcheng
Yin, Jiayi
Lu, Mingkun
Mou, Minjie
Li, Zhaorong
Zeng, Zhenyu
Tan, Ying
Wang, Shanshan
Chu, Xinyi
Dai, Haibin
Hou, Tingjun
Zeng, Su
Chen, Yuzong
Zhu, Feng
author_facet Li, Fengcheng
Yin, Jiayi
Lu, Mingkun
Mou, Minjie
Li, Zhaorong
Zeng, Zhenyu
Tan, Ying
Wang, Shanshan
Chu, Xinyi
Dai, Haibin
Hou, Tingjun
Zeng, Su
Chen, Yuzong
Zhu, Feng
author_sort Li, Fengcheng
collection PubMed
description The efficacy and safety of drugs are widely known to be determined by their interactions with multiple molecules of pharmacological importance, and it is therefore essential to systematically depict the molecular atlas and pharma-information of studied drugs. However, our understanding of such information is neither comprehensive nor precise, which necessitates the construction of a new database providing a network containing a large number of drugs and their interacting molecules. Here, a new database describing the molecular atlas and pharma-information of drugs (DrugMAP) was therefore constructed. It provides a comprehensive list of interacting molecules for >30 000 drugs/drug candidates, gives the differential expression patterns for >5000 interacting molecules among different disease sites, ADME (absorption, distribution, metabolism and excretion)-relevant organs and physiological tissues, and weaves a comprehensive and precise network containing >200 000 interactions among drugs and molecules. With the great efforts made to clarify the complex mechanism underlying drug pharmacokinetics and pharmacodynamics and rapidly emerging interests in artificial intelligence (AI)-based network analyses, DrugMAP is expected to become an indispensable supplement to existing databases to facilitate drug discovery. It is now fully and freely accessible at: https://idrblab.org/drugmap/
format Online
Article
Text
id pubmed-9825453
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-98254532023-01-10 DrugMAP: molecular atlas and pharma-information of all drugs Li, Fengcheng Yin, Jiayi Lu, Mingkun Mou, Minjie Li, Zhaorong Zeng, Zhenyu Tan, Ying Wang, Shanshan Chu, Xinyi Dai, Haibin Hou, Tingjun Zeng, Su Chen, Yuzong Zhu, Feng Nucleic Acids Res Database Issue The efficacy and safety of drugs are widely known to be determined by their interactions with multiple molecules of pharmacological importance, and it is therefore essential to systematically depict the molecular atlas and pharma-information of studied drugs. However, our understanding of such information is neither comprehensive nor precise, which necessitates the construction of a new database providing a network containing a large number of drugs and their interacting molecules. Here, a new database describing the molecular atlas and pharma-information of drugs (DrugMAP) was therefore constructed. It provides a comprehensive list of interacting molecules for >30 000 drugs/drug candidates, gives the differential expression patterns for >5000 interacting molecules among different disease sites, ADME (absorption, distribution, metabolism and excretion)-relevant organs and physiological tissues, and weaves a comprehensive and precise network containing >200 000 interactions among drugs and molecules. With the great efforts made to clarify the complex mechanism underlying drug pharmacokinetics and pharmacodynamics and rapidly emerging interests in artificial intelligence (AI)-based network analyses, DrugMAP is expected to become an indispensable supplement to existing databases to facilitate drug discovery. It is now fully and freely accessible at: https://idrblab.org/drugmap/ Oxford University Press 2022-10-16 /pmc/articles/PMC9825453/ /pubmed/36243961 http://dx.doi.org/10.1093/nar/gkac813 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Li, Fengcheng
Yin, Jiayi
Lu, Mingkun
Mou, Minjie
Li, Zhaorong
Zeng, Zhenyu
Tan, Ying
Wang, Shanshan
Chu, Xinyi
Dai, Haibin
Hou, Tingjun
Zeng, Su
Chen, Yuzong
Zhu, Feng
DrugMAP: molecular atlas and pharma-information of all drugs
title DrugMAP: molecular atlas and pharma-information of all drugs
title_full DrugMAP: molecular atlas and pharma-information of all drugs
title_fullStr DrugMAP: molecular atlas and pharma-information of all drugs
title_full_unstemmed DrugMAP: molecular atlas and pharma-information of all drugs
title_short DrugMAP: molecular atlas and pharma-information of all drugs
title_sort drugmap: molecular atlas and pharma-information of all drugs
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825453/
https://www.ncbi.nlm.nih.gov/pubmed/36243961
http://dx.doi.org/10.1093/nar/gkac813
work_keys_str_mv AT lifengcheng drugmapmolecularatlasandpharmainformationofalldrugs
AT yinjiayi drugmapmolecularatlasandpharmainformationofalldrugs
AT lumingkun drugmapmolecularatlasandpharmainformationofalldrugs
AT mouminjie drugmapmolecularatlasandpharmainformationofalldrugs
AT lizhaorong drugmapmolecularatlasandpharmainformationofalldrugs
AT zengzhenyu drugmapmolecularatlasandpharmainformationofalldrugs
AT tanying drugmapmolecularatlasandpharmainformationofalldrugs
AT wangshanshan drugmapmolecularatlasandpharmainformationofalldrugs
AT chuxinyi drugmapmolecularatlasandpharmainformationofalldrugs
AT daihaibin drugmapmolecularatlasandpharmainformationofalldrugs
AT houtingjun drugmapmolecularatlasandpharmainformationofalldrugs
AT zengsu drugmapmolecularatlasandpharmainformationofalldrugs
AT chenyuzong drugmapmolecularatlasandpharmainformationofalldrugs
AT zhufeng drugmapmolecularatlasandpharmainformationofalldrugs