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UniProt: the Universal Protein Knowledgebase in 2023
The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this publication we describe enhancements made to our data processing pipeline and to our website to adapt to an ever-i...
Formato: | Online Artículo Texto |
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Lenguaje: | English |
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Oxford University Press
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825514/ https://www.ncbi.nlm.nih.gov/pubmed/36408920 http://dx.doi.org/10.1093/nar/gkac1052 |
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collection | PubMed |
description | The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this publication we describe enhancements made to our data processing pipeline and to our website to adapt to an ever-increasing information content. The number of sequences in UniProtKB has risen to over 227 million and we are working towards including a reference proteome for each taxonomic group. We continue to extract detailed annotations from the literature to update or create reviewed entries, while unreviewed entries are supplemented with annotations provided by automated systems using a variety of machine-learning techniques. In addition, the scientific community continues their contributions of publications and annotations to UniProt entries of their interest. Finally, we describe our new website (https://www.uniprot.org/), designed to enhance our users’ experience and make our data easily accessible to the research community. This interface includes access to AlphaFold structures for more than 85% of all entries as well as improved visualisations for subcellular localisation of proteins. |
format | Online Article Text |
id | pubmed-9825514 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-98255142023-01-10 UniProt: the Universal Protein Knowledgebase in 2023 Nucleic Acids Res Database Issue The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this publication we describe enhancements made to our data processing pipeline and to our website to adapt to an ever-increasing information content. The number of sequences in UniProtKB has risen to over 227 million and we are working towards including a reference proteome for each taxonomic group. We continue to extract detailed annotations from the literature to update or create reviewed entries, while unreviewed entries are supplemented with annotations provided by automated systems using a variety of machine-learning techniques. In addition, the scientific community continues their contributions of publications and annotations to UniProt entries of their interest. Finally, we describe our new website (https://www.uniprot.org/), designed to enhance our users’ experience and make our data easily accessible to the research community. This interface includes access to AlphaFold structures for more than 85% of all entries as well as improved visualisations for subcellular localisation of proteins. Oxford University Press 2022-11-21 /pmc/articles/PMC9825514/ /pubmed/36408920 http://dx.doi.org/10.1093/nar/gkac1052 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue UniProt: the Universal Protein Knowledgebase in 2023 |
title | UniProt: the Universal Protein Knowledgebase in 2023 |
title_full | UniProt: the Universal Protein Knowledgebase in 2023 |
title_fullStr | UniProt: the Universal Protein Knowledgebase in 2023 |
title_full_unstemmed | UniProt: the Universal Protein Knowledgebase in 2023 |
title_short | UniProt: the Universal Protein Knowledgebase in 2023 |
title_sort | uniprot: the universal protein knowledgebase in 2023 |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825514/ https://www.ncbi.nlm.nih.gov/pubmed/36408920 http://dx.doi.org/10.1093/nar/gkac1052 |
work_keys_str_mv | AT uniprottheuniversalproteinknowledgebasein2023 |